LOCUS       XM_039079997            3767 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus uncharacterized LOC108350028
            (LOC108350028), mRNA.
ACCESSION   XM_039079997
VERSION     XM_039079997.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; corrected model.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051342.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts          :: corrected 2 indels
            internal stop codons :: corrected 3 genomic stop codons
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-66                JACYVU010000171.1  178074-178139       c
            67-132              JACYVU010000171.1  170530-170595       c
            133-313             JACYVU010000171.1  114960-115140       c
            314-395             JACYVU010000171.1  101427-101508       c
            396-473             JACYVU010000171.1  97005-97082         c
            474-537             JACYVU010000171.1  95334-95397         c
            538-585             JACYVU010000171.1  92704-92751         c
            586-764             JACYVU010000171.1  90385-90563         c
            765-878             JACYVU010000171.1  89858-89971         c
            879-988             JACYVU010000171.1  88758-88867         c
            989-1160            JACYVU010000171.1  88201-88372         c
            1161-1162           "NN"               1-2
            1163-1178           JACYVU010000171.1  88185-88200         c
            1179-1434           JACYVU010000171.1  86479-86734         c
            1435-1574           JACYVU010000171.1  76526-76665         c
            1575-2309           JACYVU010000171.1  71603-72337         c
            2310-2310           "N"                1-1
            2311-3767           JACYVU010000171.1  70146-71602         c
FEATURES             Location/Qualifiers
     source          1..3767
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3767
                     /gene="LOC108350028"
                     /note="uncharacterized LOC108350028; The sequence of the
                     model RefSeq transcript was modified relative to its
                     source genomic sequence to represent the inferred CDS:
                     inserted 3 bases in 2 codons; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 7
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:108350028"
                     /db_xref="RGD:11474771"
     CDS             54..3593
                     /gene="LOC108350028"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 3 bases in 2 codons;
                     substituted 3 bases at 3 genomic stop codons"
                     /codon_start=1
                     /transl_except=(pos:660..662,aa:OTHER)
                     /transl_except=(pos:2010..2012,aa:OTHER)
                     /transl_except=(pos:2841..2843,aa:OTHER)
                     /product="LOW QUALITY PROTEIN: ralA-binding protein
                     1-like"
                     /protein_id="XP_038935925.1"
                     /db_xref="GeneID:108350028"
                     /db_xref="RGD:11474771"
                     /translation="MPLGGWSEKDLEDILGGGGYKPEKDKGGALHQENWFFFNMDTTK
                     EEDVGEENRTVVCQGAAVIRRGWKRKKRYLTLFNDILVVSSKLSICEAKKHNIMGLPM
                     QIFTEDIACCDTPLYVKATNFNMVNDIISKLLPMIRKHNIEDYQLWFYPGPGKAPRVL
                     QEFILKPRNSARSQQQKNMKEKTFKKQRTSMTSQLDRGSVPHXDQVCTTPPVKKGRKL
                     FGRELSSICQDGILPGAILDMLYLLKKKGPTTTGVFLEPPSITLCQTVKDKLDSEEED
                     FLQNIQGSLMTSKLYDEWIGVPDKVNDEEKLAAVQSLLDKMPPENAALLRQLFFILYE
                     IKNNSPSNEMSSYHLSVGLAPCLLFMPSSCNNGVTXDIGKKISLVEFMIENSPKVFGE
                     DLAAVWLGTSLYHPPGGKSSCSQNNATNIGNIKETEHGLSSCPTGRICTPGYNTRPRS
                     PAALPYEGLLDSQKHEGIVYTNPTVISINPPQAKQKCLFGKSLSGLLEDKTLLNPKLG
                     FSITESFLPPTSSPSEHRRAEPGSGLTRTPSSEEISPTKFPGLYRMDEPLPPHDILHE
                     PPDIVSDDEKDHGKKKGKFKKKEKRTEGYAAFQEDSSGDEAESPSKMKRSKGIHVFKK
                     PSFSKKKEKDFKIKEKPKEEKPKEEKHKXEKHKEKKCKDLTAADVVKQWKEKKKKKKP
                     TQESEVPQTDAPSLGPIFGAPLADAVERTMMYDGIRLPAVFRECVDYMEQHGMKCEGM
                     YRGSGVKSKVDEXACDREESPNLEEYEPNTVASLLKQYLRDLPENLLTRELMPRFEEA
                     CQQRTTEMEKVQEFQRLLRELPEYNHLLLSWLIVHMDHIIAKEIETKMNIQNISLVLS
                     PTVQISNRVLYVLFTHVQELFSTVVLKQVTRPLRWSNTATMPTLPETQAGIKEEIRRQ
                     EFLLNCLHRDLQRGIXDSSKEERLWEVQRILTALKRKLREAKRQECETKISQEIASLL
                     KEDVSKEETKEIEEVINILLAQENEILTEQEELLVMEQFLRSQIASEKEEVHRLRAEI
                     AEIQSHQHGRSETEEHSSDSECESKDEEELQIILEEDLQRQNEELEIKNNHLNQAVGE
                     EREAIVELRVQLRLLQMQRAKSEQQLQEEEPERQGDTGPLPCEGVLEVIAAKEQVKPS
                     PSKDPKETHLNCPGLVHHTVSKSPLPVLPGSVP"
ORIGIN      
        1 ctttcatatg ggggctcgtc tgggatcgga gtgtgacccc cccagaaccc cgaatgccac
       61 ttggaggttg gtcagagaag gatctcgaag atatcttggg aggcggggga tacaaacctg
      121 agaaggataa aggtggagct ctgcatcagg agaattggtt ttttttcaat atggatacaa
      181 ctaaggagga agatgtagga gaagaaaatc gaaccgtggt ttgccaaggt gctgcggtta
      241 tccgaagagg gtggaaaaga aagaaacgat atctgacctt gttcaatgac attttggtgg
      301 tatccagtaa actatccatt tgtgaagcca aaaaacacaa cataatggga cttcccatgc
      361 agatattcac tgaggacatt gcatgctgtg acactcctct atatgtaaaa gcaacaaact
      421 tcaatatggt aaatgacata atcagcaagt tactaccaat gataagaaag cataacattg
      481 aagattacca actgtggttc tatcctggcc ctgggaaagc tccaagagta ctccaagaat
      541 tcatcttgaa gcccagaaac tcagcaagaa gccagcagca aaaaaatatg aaggaaaaaa
      601 cttttaagaa acagagaact tctatgacgt cgcagttgga caggggctct gtgccccact
      661 aggaccaagt atgcaccacc ccaccagtta aaaagggaag aaaactgttt ggaagagaac
      721 tcagttccat ttgtcaggat ggcatcctgc ctggagcaat tctggacatg ctgtacctac
      781 taaaaaagaa agggcccaca accacgggtg tctttttaga acctccgagt ataactttgt
      841 gccaaacagt aaaggacaaa ttggattcgg aagaggagga cttcctccaa aacatccagg
      901 gaagtctaat gacttcaaaa ctatatgatg agtggattgg tgtacccgac aaggtcaatg
      961 atgaagagaa attagccgca gtgcagagtc ttttagataa aatgccacct gaaaatgcgg
     1021 ctcttctgag gcaacttttt tttatattat atgaaattaa aaataactct ccttctaatg
     1081 aaatgtcttc ttaccaccta tctgttgggt tagccccatg tctcttattc atgcccagct
     1141 cctgcaataa tggagtgaca nntgatattg gcaaaaagat ttctctagta gaatttatga
     1201 tcgaaaattc tccaaaagtt tttggagagg acttggctgc agtgtggctt ggaacatcac
     1261 tatatcatcc tcctggagga aagtcctcat gttcccagaa taatgcaaca aatattggaa
     1321 acattaagga aaccgaacat ggactcagca gctgccccac tgggaggata tgtactcctg
     1381 gctataacac acggccgaga agtccagctg ctcttcccta tgagggcctt ctagattcac
     1441 aaaaacacga aggcattgta tatactaacc caacggtaat atctattaat ccaccacaag
     1501 caaaacagaa atgtttgttt gggaaatctc tttcgggtct tttagaagac aaaacgttgc
     1561 ttaatccaaa acttggcttc agcataaccg agtccttcct gccccccacc agcagcccta
     1621 gtgaacaccg ccgggccgag cctggcagcg ggctgacccg gactcccagc tccgaggaga
     1681 tcagccctac aaaatttcct ggattgtacc gaatggatga gcctttgcct ccccatgaca
     1741 tcctccacga gcctcctgat atcgtgtcag atgatgagaa agaccatgga aagaaaaagg
     1801 gaaaatttaa gaaaaaggag aaaaggactg aaggctacgc tgccttccag gaagacagct
     1861 ctggagatga agctgaaagt ccttccaaga tgaagaggtc caagggaatc catgtgttca
     1921 aaaagcccag cttctctaaa aagaaggaaa aggattttaa aatcaaagaa aagcccaaag
     1981 aggaaaagcc caaagaggaa aagcacaaat aggaaaagca taaagaaaag aaatgtaaag
     2041 acttgacggc cgccgatgtt gttaaacagt ggaaggagaa gaagaaaaag aagaagccaa
     2101 ctcaggagtc agaggtgcct cagacggacg ccccgagtct cggacccatt ttcggcgctc
     2161 ccttggctga cgcagtagag aggaccatga tgtacgacgg catccggctg ccagctgtct
     2221 tccgagagtg cgtggactac atggagcagc acggcatgaa gtgtgaaggc atgtaccgag
     2281 ggtcaggagt caaatcaaag gtagatgagn cagcctgtga tcgagaggag tctccaaacc
     2341 tggaagaata tgaacctaac actgtagcca gcttgctgaa gcagtatttg cgagaccttc
     2401 cagagaattt gcttaccaga gagcttatgc cccgatttga agaggcttgt cagcagagga
     2461 ccacagagat ggagaaagtg caggagttcc agcgcttgct cagggaactg ccggagtata
     2521 accatcttct gctttcctgg ctcattgtgc acatggacca catcattgcg aaggagatag
     2581 aaaccaagat gaacatccag aacatctctc tagtgctgag cccaactgtc cagatcagca
     2641 accgggtcct gtatgtgctt ttcacacacg tgcaagagct ctttagcacc gtggtcctga
     2701 agcaagtaac aagacctctg cgttggtcca acacggccac aatgcctaca ctgccagaga
     2761 cccaagcagg catcaaggaa gagatcagga gacaggagtt ccttttgaac tgtttacatc
     2821 gagatctgca gcgcgggata taggactcat ctaaagaaga aagattatgg gaagtacaga
     2881 ggattctgac tgccctcaag agaaagctga gggaagctaa aagacaagag tgtgagacca
     2941 agatttccca ggagatagcc agcctattga aagaggatgt ttccaaagaa gaaacgaagg
     3001 aaattgagga ggtcataaat atcctccttg cccaggagaa tgagatcctg actgagcagg
     3061 aggagctcct ggtcatggag cagtttctgc gtagtcagat cgcctcggag aaagaagagg
     3121 tccaccgcct ccgagctgag attgcggaga tccagagtca ccagcatggc cgcagcgaga
     3181 cagaggagca ctcttctgac agcgaatgcg agagcaagga tgaggaggag ctgcagatca
     3241 ttctagaaga agacttacag aggcagaatg aagagttaga aataaagaac aatcacttga
     3301 accaagcagt tggtgaagag cgggaggcca tcgttgagct ccgagtgcag ctccggttgc
     3361 tccagatgca gcgagccaag tctgagcagc agctccagga ggaggagccc gagaggcaag
     3421 gggacacagg cccactgcct tgtgaaggtg tccttgaggt gatagcagcc aaggagcagg
     3481 tgaagccctc gcccagcaaa gacccgaagg agacgcatct gaactgcccc ggccttgtgc
     3541 atcatactgt aagcaagagt ccactgcctg tcctgcctgg cagcgttccg taaaggctct
     3601 cagagatgct cactcttgca cacgtctgac tccgcgtcag gctcaggtcc tgggagagtg
     3661 aaggggtgga cactcggtgg tggggggctt gcagggaaca caggcatttc cagatagtgt
     3721 cagcttattt gaaaattaat tttctttgat aaaaataact attttaa
//
