LOCUS       XM_039103290            1774 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus 60S ribosomal protein L21 pseudogene
            (LOC108349932), mRNA.
ACCESSION   XM_039103290
VERSION     XM_039103290.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051337.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1774
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1774
                     /gene="LOC108349932"
                     /note="60S ribosomal protein L21 pseudogene; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 12 Proteins, and 82% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:108349932"
                     /db_xref="RGD:11494182"
     CDS             1..483
                     /gene="LOC108349932"
                     /codon_start=1
                     /product="60S ribosomal protein L21-like"
                     /protein_id="XP_038959218.1"
                     /db_xref="GeneID:108349932"
                     /db_xref="RGD:11494182"
                     /translation="MTNTKGKRRSTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKG
                     MGTVQKGMPHKCYHGKTGRVYNVTQHAEGIIVNKQVKGKILTKRINVRIEHIKHSKSR
                     DSFLKRVKENDQKEKEAKEKGTWVPLKRQPAPPREAHFVRTNGKEPERLEPSPYGFMA
                     "
ORIGIN      
        1 atgacgaaca ctaaaggaaa gagaagaagt actcggtata tgttctctag accttttagg
       61 aaacatggag tcgttccttt ggccacatac atgcgaatct acaagaaggg tgatattgta
      121 gacatcaagg gaatgggcac tgttcaaaaa ggaatgcccc ataagtgtta ccacggcaaa
      181 accggaagag tctacaatgt cacccagcat gccgagggca tcattgtaaa caagcaagtt
      241 aaaggcaaga ttctgaccaa gaggatcaat gtgcggattg agcacatcaa gcactcaaag
      301 agcagagaca gcttcctgaa gcgggtgaag gagaacgatc agaaggaaaa ggaagccaaa
      361 gagaagggca cctgggttcc gctgaagcgc cagcctgcgc cacccagaga agcccacttt
      421 gtgaggacta acggaaagga gcctgagcgg ctggagccca gtccatacgg attcatggcc
      481 taatggacac aaaggaaagg aaggacctgg actgcaaagt cttttcctta gcttgaaatg
      541 tggtgtcttc tccctgaagg aaaatgttaa agcaaatttt cattgtcttt gctgttcaga
      601 ttttactaat tgttcttcta aatgatattg cttagtgtgt agaaagtata ctcttgatta
      661 gaaagtagtc aaatatttac aaaatgtgta cagtagttcc gaatcaccga gggaaagctg
      721 agagaaatta gtgtgtggcc aggcatggcg gtgcagctct aaactctagc actggaggcc
      781 gaggcaggcg gctctaggcc tgcaggactt gcacagtagc atgtgagtgt cccaaggtgg
      841 gatatcagag agtgcgtgcc tggggtggtt cccacttcaa tgactgtcta aattctccag
      901 agcgggcaaa caaaaccaag ccaaggacag ggccggccac agacattttg tactacttgc
      961 tgaagaagca ttgattgttt tcctaaccta aagaacaagg acaaattggc attgggttca
     1021 cctttctggt gttctttcag gttgtatttc tcaggtgcat ttaataaatg ttgccacaga
     1081 gtgttaaaaa aatagtcata acaacctcta actgtgcgca gagaagaatc tgccatcatg
     1141 ttctctcatc tccttcctcc tctctccccc tcgctcctct gtagtcttct ccctgccttc
     1201 taaagcctct gttcccacct cccttccttc ttgtccaatg acaggcctca ttttatcttg
     1261 tctgccttca cctgtgtaat gaagtcatgg ggatgaaaat accccagatg catagatgta
     1321 tgaaattgat gaatattttt aaagacacaa gagagagggt gacatacaag aatgaggaga
     1381 aagctgtggt gacgctggag aattgtaggg ttggggtgct gagctggtga cggaggctga
     1441 gcaggatgct gcttctgggt ggttggagga agagaagagc atggcttccc caccaaaggg
     1501 cagccacacc tgccaagcta gggttgggta aagtgaatgc tgttgctgac cttggtgtcc
     1561 actgctgctg actttgaacc actgatgagc atttcctgca tcagtgtagc acagggcacg
     1621 gggttctaca gggagatgtg agcgatgggg cttcctgcct agttagaggg ccactctcag
     1681 ttgtaacctt gggaagactg tcactgaagt aaaactaagc actaaaccat gggcagagct
     1741 gggttttttc acagactagt tcctcattgc cttt
//
