LOCUS       XM_039101032             472 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus high mobility group protein B1-like
            (LOC108349814), mRNA.
ACCESSION   XM_039101032
VERSION     XM_039101032.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039101032.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..472
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..472
                     /gene="LOC108349814"
                     /note="high mobility group protein B1-like; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:108349814"
                     /db_xref="RGD:11411641"
     CDS             3..398
                     /gene="LOC108349814"
                     /codon_start=1
                     /product="high mobility group protein B1-like"
                     /protein_id="XP_038956960.1"
                     /db_xref="GeneID:108349814"
                     /db_xref="RGD:11411641"
                     /translation="MSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPDAP
                     RRPPLAFFLFCSEYHPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPCEKKAAKLKE
                     KYEKDNAAYRAKGKPDAAKKGVIKAEKSK"
ORIGIN      
        1 ccatgtctgc taaagaaaag gggaaatttg aagatatggc aaaggctgac aaggctcgtt
       61 atgaaagaga aatgaaaacc tacatccccc ccaaagggga gaccaaaaag aagttcaagg
      121 accccgatgc ccccaggagg cctcctttgg ccttcttctt gttctgttct gagtaccacc
      181 caaaaatcaa aggcgagcat cctggcttat ccattggtga tgttgcgaag aaactaggag
      241 agatgtggaa caacactgcc gcggacgaca agcagccctg tgagaagaag gccgccaagc
      301 tgaaggagaa gtatgagaag gataatgctg cctacagagc taaaggaaaa cctgatgcag
      361 cgaaaaaggg ggtgatcaag gctgagaaga gcaagtaaaa gaaggaagag gaagacgacg
      421 aggaggatga agaggatgag gaagaggagg aagaagacga agatgaagaa ga
//
