LOCUS       XM_039096572            1014 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus glyceraldehyde-3-phosphate
            dehydrogenase pseudogene (LOC108349792), partial mRNA.
ACCESSION   XM_039096572
VERSION     XM_039096572.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039096572.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: incomplete on the 5' end.
FEATURES             Location/Qualifiers
     source          1..1014
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            <1..1014
                     /gene="LOC108349792"
                     /note="glyceraldehyde-3-phosphate dehydrogenase
                     pseudogene; Derived by automated computational analysis
                     using gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 Proteins, and 42% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:108349792"
                     /db_xref="RGD:11474079"
     CDS             <1..915
                     /gene="LOC108349792"
                     /codon_start=1
                     /product="glyceraldehyde-3-phosphate dehydrogenase-like"
                     /protein_id="XP_038952500.1"
                     /db_xref="GeneID:108349792"
                     /db_xref="RGD:11474079"
                     /translation="AINNLFIDLNYMVYMLQYDSTHGKFNGTVKAENAKLVINRKPIT
                     IFQDQDPTNIKWGDAGTEYVMESTSVFTTMEKAGTHLNGGTKRVIISIPLADAPMFVM
                     SMNHEKYDNSLKIVSNASCTTNCLALLAKVIYGNFDIMEGLMTTIHAITATQKNVDGP
                     SGKLWHDGHGAKQNIIPASTGAVKAVGKVIPELNRKLTGMAFHVPTTNVSIVDLICHL
                     EKPAKCDNIKKVVKQASEGSLKGILGYSEDQVVSCDFNSNSHSSTFDSWAGIALNDNF
                     VKLISWYDNEYAYSNRVVKLMSYMASKE"
ORIGIN      
        1 gccatcaaca acctcttcat tgacctcaac tacatggtct acatgctcca gtatgactct
       61 acccatggca agttcaacgg cacagtcaag gctgagaatg cgaagcttgt tatcaacagg
      121 aagcccatca ccatcttcca ggaccaagat cctactaaca tcaaatgggg tgatgctggt
      181 actgagtatg tcatggagtc tactagtgtc ttcaccacca tggagaaggc tgggactcac
      241 ttgaatggtg gaaccaaaag ggtcatcatc tccatccctt tggccgatgc ccccatgttt
      301 gtgatgagta tgaaccatga gaaatatgac aactccctca agattgtcag caatgcatct
      361 tgcaccacca actgcttagc cctcctggcc aaggtcatct atggcaactt tgacatcatg
      421 gaagggctca tgaccacaat ccatgccatc actgccactc agaagaatgt ggatggcccc
      481 tctggaaagc tgtggcatga tggccatggg gcaaaacaga acatcatccc tgcatccact
      541 ggtgctgtca aggctgtggg caaggtcatc ccagagctga acaggaagct tactggcatg
      601 gccttccatg ttcctaccac caatgtatcc attgtggatc tgatatgcca cctcgagaaa
      661 cctgccaagt gtgataatat caagaaggtg gtgaagcagg catctgaggg ctcactaaag
      721 ggcatcctgg gctactctga ggaccaggtt gtctcctgtg acttcaacag caactcccac
      781 tcttccacct ttgattcttg ggctggcatt gctctcaatg acaactttgt aaagctcatt
      841 tcctggtatg acaatgaata tgcctacagc aacagggtgg tgaaactcat gtcctacatg
      901 gcctctaagg agtaagaaac cctggaccac ccaccccagt tcagcaagta tactgagagc
      961 aagatagagg ccctcagttg ctgaggagtc cccattccca actcagcccc caac
//
