LOCUS       XM_039097418             781 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus glyceraldehyde-3-phosphate
            dehydrogenase pseudogene (LOC108349756), mRNA.
ACCESSION   XM_039097418
VERSION     XM_039097418.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 12% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..781
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..781
                     /gene="LOC108349756"
                     /note="glyceraldehyde-3-phosphate dehydrogenase
                     pseudogene; Derived by automated computational analysis
                     using gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 7 Proteins, and 64% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:108349756"
                     /db_xref="RGD:11366552"
     CDS             1..516
                     /gene="LOC108349756"
                     /codon_start=1
                     /product="glyceraldehyde-3-phosphate dehydrogenase-like"
                     /protein_id="XP_038953346.1"
                     /db_xref="GeneID:108349756"
                     /db_xref="RGD:11366552"
                     /translation="MFVMAVNHEKYDNLRLSGMHPKTVNGPSRKLWRDGRGAAQNTIP
                     ASTGAAKAVGKVIPGLNGKLTSMAFHVPTPNVSVVDLTCRLEKPAEYDDIKKVVKQAS
                     EGPLKGILGYPDDQVVSCDFNSNSHFSTFGAGAGIALNDNFVKLVFWYDNAYGYSNRV
                     VDLMASMASKE"
ORIGIN      
        1 atgtttgtga tggctgtgaa ccatgagaag tatgacaact taagattgtc tggaatgcat
       61 cctaagactg tgaatggtcc ctctagaaag ctatggcgtg atggccgtgg ggcagcccag
      121 aacaccatcc ctgcatccac tggtgctgcc aaggctgtgg gcaaggtcat cccagggctt
      181 aacgggaagc taactagcat ggcctttcat gttcctaccc ccaatgtatc cgttgtggat
      241 ctgacatgcc gcctggagaa acctgccgag tatgatgaca tcaagaaggt ggtgaagcag
      301 gcatctgagg gcccactaaa gggcatcctg ggctaccctg acgaccaggt tgtctcctgt
      361 gacttcaaca gcaattccca cttttccacc tttggtgctg gggctggcat tgctctcaat
      421 gacaactttg taaagctcgt tttctggtat gacaatgcat atggctatag caacagggtg
      481 gtagacctca tggcctccat ggcctccaag gagtaagaaa cactggacca tccacccaag
      541 caaggacact gtgagaaaga gagaggccct cagatgctga agagtccctg tcccaactca
      601 gccctcaaca ctgagcctct gcctcacagt ttccatctcg gattcccata ataacaggag
      661 gggcctatgg agccctccct actctcttga atattatcaa taaagtttgc tgcaccccgc
      721 cccccaaaaa agccagttcc tggcaggcag tctgggatag ccatgagtgg tttacagcag
      781 a
//
