LOCUS       XM_039097358            1310 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus carcinoembryonic antigen-related cell
            adhesion molecule 3-like (LOC108349752), mRNA.
ACCESSION   XM_039097358
VERSION     XM_039097358.1
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086019) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 2% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1310
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..1310
                     /gene="LOC108349752"
                     /note="carcinoembryonic antigen-related cell adhesion
                     molecule 3-like; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 2 ESTs, 3 Proteins"
                     /db_xref="GeneID:108349752"
                     /db_xref="RGD:11382285"
     CDS             1..720
                     /gene="LOC108349752"
                     /codon_start=1
                     /product="carcinoembryonic antigen-related cell adhesion
                     molecule 15-like"
                     /protein_id="XP_038953286.1"
                     /db_xref="GeneID:108349752"
                     /db_xref="RGD:11382285"
                     /translation="MSHSTVGAETMESSSLLLCKGLLLTASLLTFWDSPAAALLTTKE
                     MRFSAAEGAKVLLHVPDQEEDLVSFSWYKGKDVNENLTIAHYEKSSDSLQIGKKVSGR
                     EEIYKDSSMMLWAITQKDTGFYTLQTFKAHDQQEITYVHLQVYKIVTKPYLKLNHTRV
                     KRKSASIFTCVSPDTGVDISWFFNYKPLNVTERVTLSAENRRLTISPVWKADAGIYQC
                     EVSNSFSSKKTNPLLMVLAYG"
     polyA_site      1310
                     /gene="LOC108349752"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 atgagccaca gcactgtggg agcagagacc atggagtcct cttctctact tctctgcaaa
       61 gggctcctgc tcacagcctc acttttaacc ttctgggact cgcctgctgc agcactgctg
      121 acaaccaaag aaatgcggtt ctcagccgcc gagggggcga aggttcttct ccatgtccct
      181 gaccaggaag aggacctcgt ctccttttcc tggtacaaag ggaaagatgt aaatgaaaat
      241 ctcacaattg cacattacga aaagtccagc gactcacttc aaattggaaa gaaagtcagc
      301 ggcagggaag aaatctataa ggatagctcc atgatgctct gggctatcac ccagaaggac
      361 acgggattct acactttaca gacctttaaa gcacatgatc aacaggaaat aacgtacgtc
      421 catctccaag tatacaagat tgtgacgaag ccctacctga agctcaacca cactagggtg
      481 aaaaggaaga gtgcctcaat tttcacctgt gtgtcacctg acactggagt ggacatcagc
      541 tggttcttta attacaagcc cctgaacgtc acagagagag tcacactgtc agctgaaaat
      601 cgcaggctca ccatatctcc tgtctggaag gcagacgcag ggatctatca gtgcgaagtc
      661 tccaattcct ttagttctaa gaagactaat ccactgctca tggtcttagc ttatggctaa
      721 tatctcctct cttcctacac cagagctttg ctgtttttct atcactagtg tgcacagctt
      781 atggaagtta tgaggagaaa attatcactg cacacaagag agacagtcag tgtggtgaca
      841 tacacctgta atccccaaat aaaacacagg tcaggaggaa gatgagtaca agcaaggcca
      901 gtccagttac acagtatgac aatgacttta aaataagacc tcaatatagg aacagaattg
      961 caaaggaggg ccccggttct gagtcacaga tggatctgcc ctcaggatcc agaggggact
     1021 tctcagatgc ctcaggttca ccaaaagctg tggacgctca gagtcccctg ttaaaatgct
     1081 cctgtgcttg cacggagcta ttcgcgtctc cccacaatct caaatcctcc atagtgcctc
     1141 agccctgtgc ggtctagacc ccatctatct gcttgaagtt ggaatgatgg taggagtggg
     1201 actaggcata tttcatttca ctgtagatat atgtttctgg acagttttca tctgtatatt
     1261 gtttgatgcg cagatgtaag atccatggac ataaaggcct ggtgtactga
//
