LOCUS       XM_039101470             642 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus 40S ribosomal protein S23 pseudogene
            (LOC108349721), mRNA.
ACCESSION   XM_039101470
VERSION     XM_039101470.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 27% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..642
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..642
                     /gene="LOC108349721"
                     /note="40S ribosomal protein S23 pseudogene; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 6 long SRA reads, 34 Proteins, and 74% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:108349721"
                     /db_xref="RGD:11462101"
     CDS             1..600
                     /gene="LOC108349721"
                     /codon_start=1
                     /product="40S ribosomal protein S23-like"
                     /protein_id="XP_038957398.1"
                     /db_xref="GeneID:108349721"
                     /db_xref="RGD:11462101"
                     /translation="MVLHTCIPSKRLRDKDGKEECSFISSTFYNLFRMQAEQLKYNQF
                     RELLLEPSPIISVQGHPCTTEASPDELFTQETCKCDKQYKKAHLGTALKSNPFGGASH
                     TKGIVLEKVGVEAKQPNSAIWNCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAG
                     FGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS"
ORIGIN      
        1 atggtactgc acacctgcat tcccagcaag agactaagag ataaggatgg gaaagaagag
       61 tgctccttca tctcctccac gttctacaac ttgttcagga tgcaggcaga acaactgaag
      121 tacaatcaat tcagggagtt gttattagag cccagtccta taatctcagt acaaggtcac
      181 ccttgcacta ctgaggccag tccagatgaa ttgttcactc aagaaacatg caaatgtgat
      241 aaacagtaca agaaagccca cttgggcaca gccctgaagt ccaatccgtt tgggggtgcc
      301 tctcacacaa agggaattgt gctggaaaaa gtaggcgttg aagccaaaca gccaaattct
      361 gccatctgga actgtgtcag ggtgcagctc attaagaacg gcaagaagat cacagcgttc
      421 gtgcccaatg acggttgctt gaacttcatt gaggaaaatg atgaagtttt ggttgctgga
      481 tttggtcgca aaggccatgc cgtgggtgat attcctggag tccgctttaa ggtggttaaa
      541 gtagccaatg tgtctctttt ggctctgtac aaaggcaaga aggaaagacc aagatcataa
      601 aattttgaca atggaaacag aataataaat tttcatatcc ag
//
