LOCUS       XM_039100646            1273 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus thioredoxin domain-containing protein
            11 pseudogene (LOC108349720), mRNA.
ACCESSION   XM_039100646
VERSION     XM_039100646.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1273
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1273
                     /gene="LOC108349720"
                     /note="thioredoxin domain-containing protein 11
                     pseudogene; Derived by automated computational analysis
                     using gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments"
                     /db_xref="GeneID:108349720"
                     /db_xref="RGD:11459912"
     CDS             257..979
                     /gene="LOC108349720"
                     /codon_start=1
                     /product="thioredoxin domain-containing protein 11-like"
                     /protein_id="XP_038956574.1"
                     /db_xref="GeneID:108349720"
                     /db_xref="RGD:11459912"
                     /translation="MNFTAENIYKWASENQETLFRWLQPHGGKSLLLNNELKKGPALF
                     LLTPFDPLAERHPLLDEITEVALEYSNCRGDQVVERLLQHLQRGEAPVFQSLAPELQA
                     PLPDTELMAASPCCNTVVLPQGPALSRTHNVCELCVNQSVGTRPSSVSVPQCSFFEMA
                     AALDSFYLKEQTFYRVVSGSIECSNYLTSYSPFSFYTACCRTISRGTTSFSGSAQDVF
                     TAPAIEFSALEKELLPELHSSH"
ORIGIN      
        1 cagaattgct agattttctc tccaactatg agcctgaagt actcggctac ttcgaattca
       61 gtggttctcc ccagtctcct ggatacttga ccttcttcac ctcagcactg cactctttaa
      121 agaaagatta cctaggaaca gtacgatttg gaacagaaca aataaacatc ttgcgaaact
      181 ggtatcctta gcacactctg gaagtgtgta tttacataga catttcaaca catcatttgt
      241 cttccccagg gaagtcatga acttcacagc tgagaacatc tataagtggg cctcagaaaa
      301 ccaggagacc ctcttccgat ggctacaacc ccatggaggc aagagtctgc tgttgaacaa
      361 tgagctgaag aaaggaccag cactcttcct gctcacacct tttgatccct tagccgagag
      421 gcatcctctc ctagatgaga tcaccgaagt ggccttggag tacagtaact gtcgtgggga
      481 ccaggtggtg gagcgcctcc ttcagcacct gcagcgggga gaagcacccg tgttccagtc
      541 cctggcacca gagctgcaag cccctctgcc tgatactgag ctgatggcag cgtccccctg
      601 ctgtaacaca gtggtgctgc cacaggggcc agccctctcc aggacccaca atgtctgtga
      661 gctgtgtgtc aaccagtcag tgggtaccag gcctagctca gtgagtgtgc cacagtgcag
      721 cttcttcgag atggcagccg ctctggattc tttctacctc aaggagcaga ctttttatcg
      781 tgtggtgtca ggcagcatag aatgcagcaa ttatttaacc tcctatagtc ctttcagctt
      841 ctacactgca tgttgcagga ctatatcccg gggcacgaca agtttctctg gctctgcaca
      901 ggacgtcttc acagccccag ccatcgaatt ctctgcctta gagaaagagc tgctgcccga
      961 gctccattcc tcacattgag gagaataggt accactttcc tgaagtgggc ctctctagca
     1021 cagccttcac aggcctgagc tgcagaacca acaagactct gaacatctac cttttggatt
     1081 ccaatttatt ttggttatat gcagagagac tggatgcccc caagctctgc tcccgtgaag
     1141 gagtttgcca caattgtcga tgtgaaagaa gaatctcact atatcctgga tcccaaacaa
     1201 gccctcatga agttcactct gggtactgta ggtggtttgc tccctccaca tagaaagcgt
     1261 ttgttagctt aag
//
