LOCUS       XM_039096958            1638 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus uncharacterized LOC108349526
            (LOC108349526), mRNA.
ACCESSION   XM_039096958
VERSION     XM_039096958.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 6% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1638
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1638
                     /gene="LOC108349526"
                     /note="uncharacterized LOC108349526; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1 EST,
                     and 95% coverage of the annotated genomic feature by
                     RNAseq alignments"
                     /db_xref="GeneID:108349526"
                     /db_xref="RGD:11436392"
     CDS             1..1173
                     /gene="LOC108349526"
                     /codon_start=1
                     /product="collagen alpha-1(I) chain-like"
                     /protein_id="XP_038952886.1"
                     /db_xref="GeneID:108349526"
                     /db_xref="RGD:11436392"
                     /translation="MNADFLEYQKFKDEFSSTSTEPPKWPGLPLQLPSPPGSCRAPAK
                     LAGRRRAGPLHLLRAAGRRGLLPASRSRSPAARPPGLARSPPPPPRAPTCWSPPRAGQ
                     RRQAAEDAPGRSPTPPVPGRVGPHGPRRLPASLASPTRPYRRAQGEGWRGPAPQAEDA
                     PRGARDPGRPGRGTRAADGRGGGEAAGGDVRGWEAGPTISSSPGAEGEREVPKAPPPS
                     ALPPRRLSAAGSRHDAKTAIERNRLRRAAPPRSPSPPPPERRHRLGSLPFPARGGGAH
                     AGPFRRRASAGRGGAGQGGAGRWCPPLGEATRSSRASACALLTRATSGFRLGLPEMGA
                     EVTAPIRRDPKRRPRTAGVGDGRRALGVRSPAGAAASPGQLGNYWATLSPPAAILA"
ORIGIN      
        1 atgaatgccg atttcctcga atatcaaaag ttcaaagatg aattttcttc aacatccacg
       61 gagcctccga agtggccagg gctccctctg cagcttccct ccccgcctgg cagttgccgg
      121 gctccggcta agttagccgg gcggcgccgc gcggggccgc tgcaccttct ccgggcagcc
      181 gggcgacgcg gcctccttcc cgcctcccgc tcccgcagcc ccgccgcgcg ccctcccggg
      241 ctcgcccggt cgccgccccc tcccccccgc gctcccacgt gctggtcccc tccgcgcgcc
      301 gggcagcgcc gccaggccgc tgaggatgcg ccgggccgtt ctcccacgcc cccggtgccg
      361 ggccgggtcg ggcctcacgg gcctcgccgg ctcccggcct ccctggcctc gccgacccgt
      421 ccttaccggc gggcacaggg cgaagggtgg cgcgggccgg cgcctcaggc ggaggatgcc
      481 ccgcgcgggg cccgcgatcc tggacgccca ggccgcggga cccgcgccgc ggacggcaga
      541 gggggagggg aggccgcggg cggagacgtg aggggctggg aagcgggtcc tacgatcagt
      601 tcatctccgg gcgccgaggg cgagcgggaa gtaccgaagg cgcctcctcc gtccgcgctc
      661 ccgccccgcc gcttatcggc cgccggcagc cgccatgacg ccaagaccgc gatcgagcgc
      721 aaccgtctcc gccgcgcggc gccgccgagg tcgccgtcgc ctccgcctcc cgagcgacgt
      781 caccgcctcg gctcactccc cttcccggcg cgcggcggcg gcgcgcacgc cgggcctttc
      841 cgccgacgcg cgagcgcggg gcggggcggg gcggggcagg gcggggcggg gcggtggtgt
      901 ccgcccctcg gggaagccac tcggtctagc cgagcctcgg cctgcgcact cctaacccgc
      961 gctacctctg gctttcgcct ggggcttccg gagatgggcg ctgaggtcac tgcaccgata
     1021 cgccgggatc caaaacggag gccgaggact gcgggcgttg gggacgggcg gcgcgcgctg
     1081 ggtgtccgga gtccggccgg agctgctgcg tcaccggggc agctagggaa ctattgggca
     1141 accttgtcgc ctcccgcagc gatccttgcc tgagcgacct gcggctaagt ctcttcccgg
     1201 gcggggctct agtgaaagaa agagttcgag gtgctgacat cccgtgacgc tacttgattc
     1261 gtgtgtgggt ggcccatgcc tggttcataa aagaactttt acaacagcgc ctgcctaggt
     1321 ccctccctgg aggacgggtg gaagggtgcc gtgccgaatt ggaacaagaa aggctactac
     1381 tggagggacg ttggtaactg gatctaagga cccttgggat tttgtgagtg ctagaggagt
     1441 ctgagcctgc aaataagtgg atgttgcatt agtctgacct tcgttcgtaa gaaaacaatt
     1501 gaaacaggat aatttataaa ggaaagaggt taatttgact cccagtgata gaagtcccag
     1561 tgcccacacc tggtcatata acatatttct gtcataaaat cttttagttt ttaatatatt
     1621 tttcattact tatgtgta
//
