LOCUS       XM_039101410             468 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus 60S ribosomal protein L35a pseudogene
            (LOC108349465), partial mRNA.
ACCESSION   XM_039101410
VERSION     XM_039101410.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039101410.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: incomplete on the 5' end.
FEATURES             Location/Qualifiers
     source          1..468
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            <1..468
                     /gene="LOC108349465"
                     /note="60S ribosomal protein L35a pseudogene; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 long SRA read, 18 Proteins, and 99% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:108349465"
                     /db_xref="RGD:11437438"
     CDS             <1..336
                     /gene="LOC108349465"
                     /codon_start=1
                     /product="60S ribosomal protein L35a-like"
                     /protein_id="XP_038957338.1"
                     /db_xref="GeneID:108349465"
                     /db_xref="RGD:11437438"
                     /translation="STSARLWCKAIFAGYNRGLRNQREHTALLKIEGVYARDETEFYL
                     GNRCAYVYKAKNNTVTPGGEPNKTRVIWAKVTRVHGNSGMVHAKFRSNLPAKAIGHRI
                     RVMLYPSWI"
ORIGIN      
        1 agtacgtctg caaggctgtg gtgcaaggcc atttttgctg gctacaatcg aggcctccgg
       61 aaccaaagag agcacacggc tcttcttaaa attgaaggtg tttatgcccg agatgaaact
      121 gagttctact taggcaacag gtgtgcttat gtgtacaaag caaaaaacaa tacagtgact
      181 cctggaggcg aaccaaacaa aaccagagtg atctgggcaa aagtaactcg ggtccatgga
      241 aacagtggca tggttcatgc caaattccga agcaaccttc ctgcaaaggc cattggacac
      301 agaatccgtg tgatgctgta cccatcctgg atttaaacta atggagagta aataaataaa
      361 agtaaaaaaa aaaaaacggt tcttgccaat caagcctaac aacctatgtt caatccctag
      421 aacccatata aaggcagatg gaaggagaac aaactccata aagctgtc
//
