LOCUS       XM_039100316            3634 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus putative bifunctional
            UDP-N-acetylglucosamine transferase and deubiquitinase ALG13
            (LOC108349244), transcript variant X1, mRNA.
ACCESSION   XM_039100316
VERSION     XM_039100316.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051356.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039100316.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3634
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3634
                     /gene="LOC108349244"
                     /note="putative bifunctional UDP-N-acetylglucosamine
                     transferase and deubiquitinase ALG13; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 6
                     ESTs, 1 long SRA read, 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 8 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:108349244"
                     /db_xref="RGD:11453602"
     CDS             30..2996
                     /gene="LOC108349244"
                     /codon_start=1
                     /product="putative bifunctional UDP-N-acetylglucosamine
                     transferase and deubiquitinase ALG13 isoform X1"
                     /protein_id="XP_038956244.1"
                     /db_xref="GeneID:108349244"
                     /db_xref="RGD:11453602"
                     /translation="MHKGWKKYCGQKSLNEASMDEYLGSLGLFRKAVAKDASCLFRAI
                     SEQLFHSQIHHLHIRRACVSYMKENQQAFESDVEGSFEKYLERLGDPQESAGQLELRA
                     LSLIYHRDFILYRYPGKPPTQVTDNGFEDKILLCYSNNGHYDSVYSKEFQSTAGICQA
                     ILYELLYKDVFVVDEETLKTAVDLFRSGSRRNRHNALTGSIEGSTDQKSSTQERIEEV
                     GACSSVPSTLDGSKQGTEQQKVPENPSKMLFPYKVLKGLDPEIYRNIEFDAWLDTRKE
                     LQKSDCLEYGGRYYYLGDKCQVCMEPGGKYYNAHIQEIDNENTSVLVFIEEFAERHLI
                     PMANVKPVNQVALLPTWNTIPVRSGRGYQTINGAYFPEIVMTDMNVKQRKKMFKKFRG
                     KEIYMTMAYSRGDPIVPPRIQRSMHYGHDPLLYYSQTAGQIMSSEHFYPQHSSQRQGR
                     GYGVPRDSSHLVKRQNMPNPKVGIYPGPGKKCCQSYDNVSYRSRSFRRSHRQMHCMNK
                     GCQYGFAPENGVEETVTFYALEEGNETAYSSLPNNAGPTAMVPATSGYCAARQDYTSC
                     KQTSNSEDSNDHCDNGGYHGDYLYSSEQGYETSSVYTTTVSTANLSLQDNGPCSVPQD
                     TVTSYNYPQKVLENSAAIAVSWASHVPVPVPVTVISNCAGDNQAISTSDVSSQNAIQP
                     VFVPPLPQDSPAYLQPSAAAAPPVATPVAAPLPLPPPLPPPPATPLEAGDASGFPLPP
                     PPPPYSYDPSGSDLPQVNTNIYSSSWFHILLVPDLGLYTKVLQYYFNLGLQCYHHNYW
                     HSMVYMPHVQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ
                     QQQQQQQQLHGEGYPDCTEQPLVDQSVPPVYSDVARADGAHTDISTNDTFPIADAVPV
                     PQGAVYYPVMADPYGSPLSGFDSYMPVASDYSSIAMWHPVGAAYGASTQIHGAINPGP
                     IGYMILPNSPQYTPQN"
ORIGIN      
        1 tctgtacctt tctcctcatc ccatgcacaa tgcataaagg atggaaaaag tactgcggcc
       61 agaagtctct gaatgaggca tcaatggatg agtatttagg cagtttaggg ctgtttcgaa
      121 aggctgttgc caaggatgcc tcttgcctct ttcgtgctat ttctgagcag ttgtttcaca
      181 gccagatcca tcatttacat atcaggagag cttgtgtctc atatatgaag gaaaatcaac
      241 aagcttttga gtctgacgta gagggatctt ttgagaaata cctggaacgg ttgggagatc
      301 ctcaggagag tgctggccag ctggaactaa gagctctttc tctaatttac catcgagatt
      361 tcattctata tcgttatcct ggaaagccac caactcaagt cacagataat ggctttgaag
      421 acaagattct tctctgttat tcaaataatg gccattatga ttctgtatat tcaaaagaat
      481 ttcaatcaac tgcaggaatt tgtcaagcta tattatatga acttctttat aaagacgtat
      541 tcgttgtgga tgaagaaaca ttgaaaactg cagttgattt gtttcgaagt ggttctagga
      601 gaaacagaca caatgctttg actggaagta tagaaggcag tactgatcaa aagagctcaa
      661 cccaagagag aatcgaagag gttggtgcct gttctagtgt cccaagtaca ctagatggca
      721 gtaaacaagg aacagaacaa caaaaggttc cagaaaatcc atcaaagatg ctgtttccct
      781 ataaggtact gaaaggtctg gatccagaaa tctatcgcaa catagaattt gatgcttggt
      841 tggacactag aaaagaactt caaaaatcag attgcctgga gtatggtgga agatattact
      901 atttaggaga caagtgtcag gtttgcatgg aaccaggtgg aaaatattat aatgctcaca
      961 ttcaggaaat tgataatgag aatacctcgg tcttagtttt cattgaggaa tttgcagaaa
     1021 ggcatttaat tccgatggcc aatgtaaaac cagtcaacca agtggcactt cttcctacct
     1081 ggaatactat accagttcgc agcggaagag gttaccagac tataaatgga gcctatttcc
     1141 ctgaaatagt tatgacagac atgaatgtga agcaacgaaa gaagatgttc aagaaatttc
     1201 gagggaaaga gatttatatg accatggcat atagcagggg ggaccccatt gtcccaccca
     1261 ggattcagcg tagtatgcat tatgggcatg accctctact gtactactca cagacagctg
     1321 gacaaattat gtctagtgaa catttttacc ctcaacattc atctcaaaga caaggtcggg
     1381 gatatggggt gcccagggat tcatctcact tagtaaaaag gcaaaacatg ccaaatccta
     1441 aagttgggat ttaccctggc ccgggcaaaa aatgctgcca gagctatgat aatgtctctt
     1501 ataggtctcg ttcttttagg cgtagccatc gtcagatgca ttgtatgaat aagggatgcc
     1561 aatatggttt tgctccagag aatggagtgg aagaaactgt tacattttat gcacttgaag
     1621 aagggaatga gactgcttat tcatctttac ctaacaatgc tggtcccact gcaatggtcc
     1681 ctgctacttc aggatactgt gctgcaaggc aggactatac ttcatgtaaa cagacttcga
     1741 attcagaaga cagtaatgac cactgtgata atggaggata tcatggagat tatctttatt
     1801 cttcagaaca aggctatgaa acttccagtg tgtataccac aactgtatct acagctaacc
     1861 tgtctcttca ggacaatgga ccatgttctg tgcctcaaga cacagttacc tcatacaact
     1921 atccccaaaa ggtgttggaa aattctgcag caattgcagt ttcttgggcc agccatgttc
     1981 cagttccagt tccagtcaca gtcatttcta actgtgcagg agataatcaa gctattagta
     2041 cctctgatgt ttcctcacag aatgccatac aacctgtctt tgtacctcca ctcccacaag
     2101 acagtccagc ctatcttcag ccttcagcag cagcagcacc accagtggca acaccggtgg
     2161 cagcaccact accactgcca cctccattgc ctcctcctcc tgccactcct cttgaagcag
     2221 gagatgcttc agggtttcct cttccaccac cgccgccgcc ttattcctat gatccaagtg
     2281 gaagtgatct cccccaagtc aatacaaaca tttattcctc ttcttggttt catattttgc
     2341 tggttccaga tcttggcctt tatacaaaag ttttgcagta ctatttcaat ctgggattgc
     2401 agtgctatca tcacaactat tggcattcca tggtctatat gccacatgtg cagcagcagc
     2461 agcagcagca gcagcagcag cagcagcagc agcagcaaca acaacaacag cagcagcaac
     2521 agcagcagca acagcagcag caacagcagc agcaacagca gcagcagcag cagcaacagc
     2581 agcagcagca acagcagcag cagcagcaac aacaacaaca gcttcatgga gagggttatc
     2641 cagattgtac tgagcaaccc ctggtagacc aaagcgttcc tcctgtgtac agcgatgtgg
     2701 caagagcaga tggtgcacac acagatatat caacaaatga tacttttccc attgctgatg
     2761 ctgtacctgt ccctcaagga gcagtctact atccagtaat ggcagatccc tatggatctc
     2821 ctttgtcagg ttttgattcc tacatgcctg ttgcatcaga ttattccagt attgccatgt
     2881 ggcatccagt tggtgcagca tatggtgctt ctacacaaat ccatggtgct ataaatcccg
     2941 ggccaattgg ctatatgatt ctacctaact cacctcagta tacacctcag aattaagatt
     3001 tggcaacatc aaatactttt gctgccattt ttactgttat ggttcataaa tgtcttacat
     3061 tagttcttaa gtggtttagt tgaaaagaat gttcactcta tctttaaaat tattttactt
     3121 ttgaagtaaa atatttcttt aaaacaaaga catactactt tttgttatga ataagaaaat
     3181 tgcaatgaat gtaccactgg tccctataat gggcaagttc attggaggca gcttcctgtt
     3241 agctagctta ttaaaattgt attaactgat ggtgccaatt gataaaagga aggaaaacat
     3301 agaagctatt ttcttatatg atacatctta atcaattatt taaagttagt gtgatttcca
     3361 tttttcaaaa catttaagag acaaagcatt cagcctgtgc tcctgggtat ttgtttatat
     3421 taaatgagac cttttcaggt ttctttcaga attgtcagaa ctgaattgca atctgatatt
     3481 aagcagtttt gaaggcacat ggtgttctgc tttccatttc tcaccatatg gtattgttta
     3541 atactggatt tacagaactg tcctactgca cagtattaca gtatcctttg cacaatttgc
     3601 agtaaataaa aactagcatt taaaattgcc aaaa
//
