LOCUS       XM_039100280             743 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus high mobility group protein B1
            pseudogene (LOC108349189), mRNA.
ACCESSION   XM_039100280
VERSION     XM_039100280.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051356.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039100280.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..743
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..743
                     /gene="LOC108349189"
                     /note="high mobility group protein B1 pseudogene; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 28 ESTs, 39 long SRA reads, 24 Proteins, and 70%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:108349189"
                     /db_xref="RGD:11468204"
     CDS             102..743
                     /gene="LOC108349189"
                     /codon_start=1
                     /product="high mobility group protein B1-like"
                     /protein_id="XP_038956208.1"
                     /db_xref="GeneID:108349189"
                     /db_xref="RGD:11468204"
                     /translation="MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKK
                     CSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAF
                     FLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIA
                     AYRAKGKPDAAKKGVVKAEKSKKKKEEEDDEEDEEDEEEEEEEEEEEEEDDDE"
ORIGIN      
        1 ccattgcagt acattgagct ccatagagac agcgccgggg caagcgagag ccggacgggc
       61 actgggcgac tctgtgcctc gcggaggaaa atcaactaaa catgggcaaa ggagatccta
      121 agaagccgag aggcaaaatg tcctcatatg cattctttgt gcaaacctgc cgggaggagc
      181 acaagaagaa gcacccggat gcttctgtca acttctcaga gttctccaag aagtgctcag
      241 agaggtggaa gaccatgtct gctaaagaaa aggggaaatt tgaagatatg gcaaaggctg
      301 acaaggctcg ttatgaaaga gaaatgaaaa cctacatccc ccccaaaggg gagaccaaaa
      361 agaagttcaa ggaccccaat gcccccaaga ggcctccttc ggccttcttc ttgttctgtt
      421 ctgagtaccg cccaaaaatc aaaggcgagc atcctggctt atccattggt gatgttgcga
      481 agaaactagg agagatgtgg aacaacactg ctgcggatga caagcagccc tatgaaaaga
      541 aggccgccaa gctgaaggag aagtatgaga aggatattgc tgcctacaga gctaaaggaa
      601 aacctgatgc agcgaaaaag ggggtggtca aggctgagaa gagcaagaaa aagaaggaag
      661 aggaagacga cgaggaggat gaagaggatg aggaagagga ggaagaagag gaagaggaag
      721 aagaagaaga tgatgatgaa taa
//
