LOCUS       XM_039100500             575 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus aminoacylase-1A pseudogene
            (LOC108349164), mRNA.
ACCESSION   XM_039100500
VERSION     XM_039100500.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051356.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039100500.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 9% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..575
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..575
                     /gene="LOC108349164"
                     /note="aminoacylase-1A pseudogene; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     Protein, and 88% coverage of the annotated genomic feature
                     by RNAseq alignments"
                     /db_xref="GeneID:108349164"
                     /db_xref="RGD:11514795"
     CDS             1..549
                     /gene="LOC108349164"
                     /codon_start=1
                     /product="aminoacylase-1A-like"
                     /protein_id="XP_038956428.1"
                     /db_xref="GeneID:108349164"
                     /db_xref="RGD:11514795"
                     /translation="MWKPDIWFWREKAEQTLWEGAVTSVNLTKLEGGVAYNVLPATMS
                     ACFDFRVAPDVVMKAFEKQLQSWCQEAGEEVTFEFAQKFTEPRMTPTDDTDPWWAAFS
                     GACKEMNLTLEPEIFPAATDSRYIRVVGIPALDFSPMNRTPVLLHDHNERLHEAVFLR
                     GVDIYTRLLAALASVPALPGES"
ORIGIN      
        1 atgtggaagc ctgacatctg gttctggagg gaaaaagcag agcagactct atgggaaggg
       61 gctgtgactt cagtgaatct gactaagctc gaaggtggtg tggcctataa tgtgttacct
      121 gctaccatga gtgcctgttt tgacttccga gtggcgccag atgtagtcat gaaggccttc
      181 gagaagcagc tgcagagctg gtgccaggaa gcgggagagg aggtcacctt tgagtttgct
      241 cagaagttta cagagcctcg aatgacaccc actgatgata cagacccatg gtgggcagct
      301 ttcagcgggg cctgcaagga aatgaacctt actctggagc cagagatctt tcctgctgcc
      361 actgacagcc gatatatccg agtggtaggg atcccagctc tggacttctc gcccatgaac
      421 cgcacacccg tgttactaca tgaccataat gaacgactgc acgaggctgt gtttctacgt
      481 ggggttgaca tatatacacg cctacttgct gcacttgcta gtgtgcccgc tctgcctggt
      541 gaaagctgag ctttcagccc aatcactgcc aagga
//
