LOCUS       XM_039093444            1354 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus high mobility group protein B1
            pseudogene (LOC108348989), mRNA.
ACCESSION   XM_039093444
VERSION     XM_039093444.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039093444.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1354
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1354
                     /gene="LOC108348989"
                     /note="high mobility group protein B1 pseudogene; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 3 long SRA reads, 30 Proteins, and 80% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:108348989"
                     /db_xref="RGD:11444414"
     CDS             187..834
                     /gene="LOC108348989"
                     /codon_start=1
                     /product="high mobility group protein B1-like"
                     /protein_id="XP_038949372.1"
                     /db_xref="GeneID:108348989"
                     /db_xref="RGD:11444414"
                     /translation="MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKK
                     CSERWKTMSAKEKGKCEDMAKADKARYEREMKTYIPHKGETKKKFKDPNAPKRPPSAF
                     FLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWTNTAADDKQPYGKMAAKLKEKYEKDIA
                     AYRAKGKPDAAKKGVVKAEKSKKKKEEEDDEEDEEDEEEEEEKEDEDEEEEDDDE"
ORIGIN      
        1 aagaagatca aggaactcca atccaaccta gaatgacttt tttttaaaat aatatttatt
       61 tattatatat aagtacactg tcgagccatt gcagtacatt gagctccata gagacagcgc
      121 cggggcaagc gagagccgga cgggcactgg gcgactctgt gcctcgcgaa ggaaaatcaa
      181 ctaaacatgg gcaaaggaga tcctaagaag ccgagaggca aaatgtcctc atatgcattc
      241 tttgtgcaaa cctgccggga ggagcacaag aagaagcacc cggatgcttc tgtcaacttc
      301 tcagagttct ccaagaagtg ctcagagagg tggaagacca tgtctgctaa agaaaagggg
      361 aaatgtgaag atatggcaaa ggctgacaag gctcgttatg aaagagaaat gaaaacctac
      421 atcccccaca aaggggagac caaaaagaag ttcaaggacc ccaatgcccc caagaggcct
      481 ccttcggcct tcttcttgtt ctgttctgag taccgcccaa aaatcaaagg cgagcatcct
      541 ggcttatcca ttggtgatgt tgcgaagaaa ctaggagaga tgtggaccaa cactgccgcg
      601 gatgacaagc agccctatgg gaagatggcc gccaagctga aggagaagta tgagaaggat
      661 attgctgcct acagagctaa aggaaaacct gatgcagcga aaaagggggt ggtcaaggct
      721 gagaagagca agaaaaagaa ggaagaggaa gacgacgagg aggatgaaga ggatgaggaa
      781 gaggaggaag aaaaggaaga cgaagatgaa gaagaagaag atgatgatga ataagttggt
      841 tctagcgcag ttttttttct tgtctataaa gcatttaacc cccctgtaca caactcactc
      901 cttttaaaga aaaaaattga aatgtaaggc tgtgtaagat ttgtttttaa actgtacagt
      961 gtcttttttt gtatagttaa cacactaccg agtgtgtctt tagctagccc tgtcctggtg
     1021 gtattttcaa tagccactaa ccttgcctgg tacagtctgg gggttgtaaa ttggcatgga
     1081 aattaaagca ggttcttgtt ggtgcacagc acaaattagt tatatatggg gacagtagtt
     1141 tggtttttgg tttctttttt tttgtttttg tttttttttc cttttggttt tttttttttc
     1201 catcttcagt tgtctctgat gcagcttata cgaaggtaat tgttgttctg ttaactgaat
     1261 accactctgt aattgcaaaa aaaatggcgg ctgttttgtt gacattctga atgcttctaa
     1321 gtaaatacaa ttttttttat taaaaaaaaa aaaa
//
