LOCUS       XM_039098146             342 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus 40S ribosomal protein S29 pseudogene
            (LOC108348980), mRNA.
ACCESSION   XM_039098146
VERSION     XM_039098146.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051354.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039098146.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..342
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="19"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..342
                     /gene="LOC108348980"
                     /note="40S ribosomal protein S29 pseudogene; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 4 long SRA reads, 10 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:108348980"
                     /db_xref="RGD:11492142"
     CDS             55..207
                     /gene="LOC108348980"
                     /codon_start=1
                     /product="40S ribosomal protein S29-like"
                     /protein_id="XP_038954074.1"
                     /db_xref="GeneID:108348980"
                     /db_xref="RGD:11492142"
                     /translation="MGHQQLYWSHPRKFGQGSCSCRVCSNRHGLIMCRQCFRQYSKDI
                     GFIKLD"
ORIGIN      
        1 agcaagcttg aaaaggctct tacgcttttt cctccttggg cgtctgaagg caagatgggt
       61 caccagcagc tctactggag tcacccgcgg aagttcggcc agggttcttg ctcttgccgc
      121 gtctgctcta accgccacgg tctgatcatg tgccgacagt gcttccgtca gtactcgaag
      181 gacataggct tcattaagtt ggactaagcg acctgaatgg atgattcgac tgtctaccca
      241 gtgaaaccaa ctgtctaccc tgtgatacca atcatgctag tctttgtgca cacagaataa
      301 aaaaactgaa ggcctcaaaa aaaaaaaaaa aaaaaaaaaa aa
//
