LOCUS       XM_039098242             635 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus 60S ribosomal protein L29 pseudogene
            (LOC108348937), mRNA.
ACCESSION   XM_039098242
VERSION     XM_039098242.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051354.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039098242.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..635
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="19"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..635
                     /gene="LOC108348937"
                     /note="60S ribosomal protein L29 pseudogene; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 4 Proteins, and 93% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:108348937"
                     /db_xref="RGD:11501100"
     CDS             1..471
                     /gene="LOC108348937"
                     /codon_start=1
                     /product="60S ribosomal protein L29-like"
                     /protein_id="XP_038954170.1"
                     /db_xref="GeneID:108348937"
                     /db_xref="RGD:11501100"
                     /translation="MAKSKNHTTHNQSHKWHRNGIKKPWSQRYESLQGVDPKFLRNMC
                     FAKKHDKKGLKRMQANSAKAVSARTVAIKALGKPQAVKPKMPKGPSRKLSRLAFITHP
                     KLRKWIQSYTAKGCRLCQPKPKVQTKAEATTSAKAQASAPAQAPKGAQAPVKAP"
ORIGIN      
        1 atggccaagt ccaagaacca caccacacac aaccagtccc acaaatggca cagaaatggc
       61 atcaagaaac cctggtcaca aagatacgaa tctcttcagg gggttgaccc caagttcctg
      121 aggaacatgt gctttgccaa gaagcacgat aagaaagggc tgaagagaat gcaggccaac
      181 agcgcaaagg cagtaagtgc acgcacagtg gccatcaagg ccctcgggaa gcctcaggcc
      241 gtcaagccca agatgccaaa gggccccagc cgcaaactca gccgtctggc tttcatcact
      301 caccccaagc ttcggaagtg gattcaaagc tacacggcca agggttgtag gctctgccaa
      361 ccaaaaccta aggttcaaac caaggcagag gccacaacct cagctaaggc ccaagcttca
      421 gctccagccc aggctcccaa gggtgcccag gcccctgtga aggccccata gaaaaggctc
      481 ctgccagtgt gaagacagat ggactgctgg gacacaacca cctacacact atctgcagat
      541 gaccagtgtc ctatgctgtt tttacaaata aacttgagac aagaagaaac ccttcagtgt
      601 gctcaaagag gcccctgaga cacggagcaa gtgcc
//
