LOCUS       XM_039098334            1001 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus histone H3.3-like (LOC108348882),
            mRNA.
ACCESSION   XM_039098334
VERSION     XM_039098334.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051354.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039098334.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 36% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1001
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="19"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1001
                     /gene="LOC108348882"
                     /note="histone H3.3-like; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 159
                     Proteins, and 75% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:108348882"
                     /db_xref="RGD:11450965"
     CDS             1..648
                     /gene="LOC108348882"
                     /codon_start=1
                     /product="histone H3.3A-like"
                     /protein_id="XP_038954262.1"
                     /db_xref="GeneID:108348882"
                     /db_xref="RGD:11450965"
                     /translation="MDSSAVSPCPVFYRTVKDQVIPMGMHNSYQRTPVHMEGHKQLLE
                     DLHHSLSPFVQPKNTDQKPDHLRPPPNICYNGVHTVAHTKQTALKSTGAKAPRKQLAT
                     KAACKCAPSTGGVKKPHHYRPGTVALCEIRCYQKSTELLIRKLPFQRLVRKIAQDFKT
                     DLCFQSAATGALQRASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLASRIGGDHA"
ORIGIN      
        1 atggactcat ctgcggtcag tccctgtcct gtattctaca ggactgtgaa ggaccaagtc
       61 atccctatgg ggatgcacaa tagctatcag agaactcctg tgcacatgga ggggcacaaa
      121 caactgctgg aagacttgca ccactccctg agtccctttg ttcagcccaa gaataccgac
      181 cagaagcctg atcatcttag gccccctcct aatatctgct acaacggtgt ccataccgtg
      241 gctcatacaa agcagactgc cctcaaatcc accggtgcta aagcacccag gaaacaactg
      301 gctacaaaag ctgcttgcaa gtgtgcgccc tctactggag gggtgaagaa acctcatcat
      361 tacaggcctg gtactgtggc actctgcgaa atcagatgct atcagaagtc caccgaactt
      421 ctgatacgca agctcccctt tcagcgtctg gtgagaaaaa ttgctcagga cttcaaaaca
      481 gatctgtgct tccagagtgc agctactggt gctttgcaga gggcaagtga ggcctatttg
      541 gttggccttt ttgaagatac caatctgtgt gctatccatg ccaaacgtgt aacaattatg
      601 ccaaaagata tccagctagc aagccgcata ggtggagatc atgcttaaga gtccactatg
      661 aggggaaaca tttcattctt aaaaattatt ttttctcttc ttcctgttat cagtagttct
      721 gaatgttaga tattttttct atagggtcaa aggtacctaa gtatatgatt gccagtgaaa
      781 acatagagga cagaatcagg aattggcagt ttctccacgt tcatttgtgt gtgaattttt
      841 aatataaatg caagatgtaa agcattaatg caagcaaact gtttcagtga acacatttta
      901 acagctcaat tttataacaa ttataaataa gcctgttaaa attttctgga caatgccagc
      961 atttggattt ttaaaaaata agaaaatttc ttactgacag c
//
