LOCUS       XM_039097296            4259 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus uncharacterized LOC108348827
            (LOC108348827), mRNA.
ACCESSION   XM_039097296
VERSION     XM_039097296.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051353.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 10% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..4259
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="18"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4259
                     /gene="LOC108348827"
                     /note="uncharacterized LOC108348827; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1 EST,
                     and 97% coverage of the annotated genomic feature by
                     RNAseq alignments"
                     /db_xref="GeneID:108348827"
                     /db_xref="RGD:11405714"
     CDS             1..804
                     /gene="LOC108348827"
                     /codon_start=1
                     /product="microtubule cross-linking factor 1-like"
                     /protein_id="XP_038953224.1"
                     /db_xref="GeneID:108348827"
                     /db_xref="RGD:11405714"
                     /translation="MLLAALRPRAGQRHQRGGRRGQRGRPRWRGGAAAPADRGARRPT
                     PLTSRVPPLARAQALRSSVAQVRLRRAGVWRGPWRRPLRAAQAENFGGVRAAPSPPAR
                     RARPFIECLRRRPRRAHPPAAAGPPLPERAAAGRAPARRLCLARAARAPHCLRSGSAD
                     RFWSSGSDSPPRSACPARSGSGVPVSGLSFPAPVHFAGSSGDLPGSEARGRSGVRTVG
                     WRDFGKSNFPAPWPQCLLSRPTEWATNATQSSKSTKVQRACRVLSGFRG"
ORIGIN      
        1 atgctgctag cggcgctccg gccccgtgcg gggcagcggc atcagcgggg tggccggcgg
       61 ggacagcgcg ggcggccgcg ctggcgagga ggggccgcgg cgcctgcgga ccggggtgcg
      121 cgccgcccca cgccgctcac atcgcgggtt ccaccgctcg cccgagctca ggcgctacgc
      181 tcctccgtcg cccaggtgcg gctccggcgg gccggggtgt ggcgcgggcc gtggcggcgg
      241 cccctccgtg ccgctcaagc tgaaaacttt ggtggcgtcc gcgcggcgcc gtctccgccg
      301 gcgcgccggg ctcgcccctt tatagagtgt ctgcgccgcc gcccgcgccg cgcacacccc
      361 cccgccgccg ccgggccgcc cctcccggag cgagcggccg cgggcagggc tccggcccgg
      421 cgcctttgtc tcgcccgggc cgctcgggcg ccgcactgcc tgcgctccgg gtcggccgac
      481 cgcttctggt cctcgggaag cgactcgcct ccccgctccg cttgcccagc ccgctccggc
      541 tcaggtgtcc ctgtctctgg actttctttc ccagctcctg tccacttcgc ggggtcctcc
      601 ggcgacctgc caggctcgga ggctcgcggc cggagcggag tgcgcacggt ggggtggcgg
      661 gacttcggca agagcaactt tccggctccg tggccccagt gcctactatc caggcctacg
      721 gagtgggcaa cgaatgcgac tcaaagttcc aagtccacga aagtccagcg agcctgccgc
      781 gtgttgtcgg gatttcgggg ataacgtggg ggccagtatc ccaacttatc tgactattca
      841 ggctcttgga aagctgtctt tcggctctac gcttgggttt tcccacactg cattctcccg
      901 ccccgcatct aagcctaagt tccacgaagc aacagctttg ggctccggga agagcgcaag
      961 agaattgtgc tgaggaagaa cgcgcacagg ttggagtcgc ctccaaacag ccccaagagc
     1021 cacttacgaa aaaaaaaaat tccttaaggg agaatcaaaa gcgggttccc acaaagtctg
     1081 aagtctttca aggaagatgg atcccactgg atcccataac cgcctggtcc ctatggactc
     1141 ttcatttagg tcatgttaag ccactctcaa ccctttcctt gttgcttgag gccctcttcc
     1201 atcctcttct cgagcccacc cctcctgatc tgtagcaagc cggcatgctc gccccaggtc
     1261 tttcttccca gtgtaactgt ttaattggaa gacttgcttt gcattttcta tgaggtgtgg
     1321 ttctgggagg accattctag tccctccaat gaaggcgaat ccaggtctgg cccttgtaaa
     1381 aggagctagc cctccgattc cagaggtgtg gctggactga tgggaataga agggtgaaga
     1441 aggtgggtgg ggctcaggca gaagtggaca ttgctaaccc atctcttcag cgagtgtgta
     1501 aggatgccgg atgctgaggt ctccatgtgg gacctggcca gggtggtttg ccatggcagg
     1561 gtcgaggtga aacctggctg agctgtgtgg ttgagattgc aggctacccc actcccttga
     1621 ggccgacttc gctggaattt cgttgagaag atgtcaaggg cgctgaggga agaacgaagc
     1681 cctgtgtgtg acagaagcct atgtagatcc cctccactgc agaagggcca cactcaagtg
     1741 gatcccaaag gcagagacca aagaagaggg tttttttttt ttttttcttt taagggaaaa
     1801 ttggaaaacc taacttcctg cttacctagc ctctccctcc ctccctttct tatgcttcta
     1861 tggtaaagct ttcattgttc ttatgcagtg tggtaaattt caatgaaaag agtttgcatc
     1921 tgaagcctta atcaaaacag tctattgcaa agtgacaggg tgtcgtgggg gtatttcccc
     1981 caatgaggca ggaagcaggc tctcgggctg tgcccagaag aagtgcacgc tccactgtag
     2041 ttagaggagc acacagtagt acagtgtgca cacggagcat gcacgcttac ggcatgacca
     2101 ctgtctatta agacattgca atacctaagc accattgcaa aaacaaaagt tgcttttctt
     2161 ccctgtaatt aaatctaatt tgttaattgt ctctccccct gcgatgctgt tttcgtctta
     2221 agaggtgaca cgttattatt tcgtctgctt aatgatatta tttacaaatt aatactgtat
     2281 attttacatt aatggaacat ataattaggt gtttgaatta atttgtatca tttcttcaca
     2341 tgaaacagaa agcctgtctg caagattgac ctgacaagga gaggtgacta gttgatttct
     2401 gacttcactg gtccctgaag atacctgact ctggatccac acgagacagt tttacatagc
     2461 tggacttgac attttcttta cagcgtggtt atttctccag ttccttcaca cagaataggt
     2521 attcaaatat tagggctttt gttttctgtc ttcccttctc cctcgccgtc actcccttcc
     2581 cctcgggttc cttccccacc ccccaccccc aacttttgtt ttaagtcctt tgggttagat
     2641 tcagcatggt gtttgcccgt cttcaatgct gtgacaagtg accgctaatt ggttctcacc
     2701 agagcaaaga tattaccata ctaatattat tattggtaag aagaggtaat tgataacacc
     2761 acctgccact ctggggcaat cacaatgata aatgtttcca tcaacaggaa atctgtgctt
     2821 ggtgtaccac agcccaacgc aaacagcatg tcaagtgcca attattgaga tgttgttttc
     2881 ctattacagg gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtaccaga
     2941 aagcatgtag tcaagaatta tccttgtcgg ggattggggg ggggtgtttt atttgagctt
     3001 gaagctcttc cacttgaagt taactagtta aatccgggca tagccctgcc caccccagat
     3061 tcagctcagc ctcagctctg attgcttttt gcattcaaag tcattgaaat aaatgcgccc
     3121 agattctttt aataggaggg agccatgtgc ttcatattta aatccgcctt gctccctgtg
     3181 ccttggagcc ttgctgcatc gtccctacag ggtaccatgc agcttcacta gaggcatcac
     3241 ggtgaagcag tccaggactt aacacacaca cacacacaca caccacagtc atctgcatgc
     3301 cgtgggctac aaatgttatg gaagtcctcc tcccctgacc accaaacttt gaatctgggc
     3361 tgcatatggc tgggaatcag gtgctttaag catatatata tatatatata tatatatata
     3421 tatatatatg attatataaa tgatgtcagg gctgaaaact ttgactcccc tgcctgtggg
     3481 ggaggctcaa gtgattatta ttagcttgca ctaatagatg caggcctcaa aaggcgaaat
     3541 cagctattga taattgcaag aagtataagg cagctactgt atcgatcgcc tggcccctta
     3601 ttcccctggt atgggagaga taagaagact cactctttag tgcaatataa tttcttttga
     3661 cctatctgct tgctacagac ttatgatgaa tagccggagt ggctaaagtc ctttatcacg
     3721 aaagttaccc cttgatataa tattgattct ttataactag ctccaaacac aaaaatcaaa
     3781 ctgtcctctt gaccatcatc atcatcaata tcatcacaaa gccttcggaa taaagatcag
     3841 ctgcagcctg aaaacgcttt ctgtaatctc cctggctaat ctttatttgc tgatgatgaa
     3901 aagggggaaa atgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt
     3961 gtgtgtaatg tcatttggac gaacactctt acacatccta ggtcaaagca ggcctgtttc
     4021 ttccggggag tgcttcatgg caggctgatg tgctcaggcc tgctaggcct gtccttggag
     4081 ctgtcccctg gagtcttggg tctggggggg gggggactaa aggggctcaa aggctcctgg
     4141 ctagctgcct tgcactggag ataggagtgg cccagagcct tctgctcagc cggaaaacat
     4201 cctcttcctg ggtgctctga ccagcctgaa gccctggctc ccgagaggag atggggctc
//
