LOCUS       XM_039097414             600 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus 60S ribosomal protein L31 pseudogene
            (LOC108348781), mRNA.
ACCESSION   XM_039097414
VERSION     XM_039097414.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051353.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039097414.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..600
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="18"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..600
                     /gene="LOC108348781"
                     /note="60S ribosomal protein L31 pseudogene; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 32 Proteins, and 55% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:108348781"
                     /db_xref="RGD:11367741"
     CDS             113..568
                     /gene="LOC108348781"
                     /codon_start=1
                     /product="60S ribosomal protein L31-like"
                     /protein_id="XP_038953342.1"
                     /db_xref="GeneID:108348781"
                     /db_xref="RGD:11367741"
                     /translation="MEIEYGYSTFHPTIPRALPFQLGPGKMAPAKKGGKKKKGHSAIN
                     ELVTREYTINIHKRIHGVAFRKRDPWAVKEIQKFAMKEMGTPDVHTDNKLNKAVWAKG
                     IRNVPYRIRVRLSKKRNEDEDSPNKLYTLVTYVPVTTFKNLQTVNVDEN"
ORIGIN      
        1 aagagaaaca caggaaaaca taaataaaca agtagaagcc tatagagagg aatcacaaaa
       61 atccctgaaa gaattccagg gaaacacaat caaacagttg aaggaattaa aaatggaaat
      121 agagtacggc tactcgactt tccatcccac aatccctcga gcccttcctt tccaacttgg
      181 acccggcaaa atggctcccg caaagaaggg tggcaagaag aagaagggcc attctgccat
      241 caacgagttg gtgacccgag aatacaccat caacattcac aagcgcatcc atggagtggc
      301 cttcaggaag cgtgatcctt gggcagtcaa agaaattcag aaatttgcca tgaaggagat
      361 ggggactcca gatgtgcaca cagacaacaa gctcaataaa gccgtctggg ccaaaggaat
      421 aaggaatgtt ccctaccgaa tccgagtacg tttgtccaaa aagcgtaatg aggatgaaga
      481 ttcaccaaac aagctctaca cactggtaac atacgtgcct gttaccacat tcaaaaatct
      541 acagacggtc aatgtggatg agaactaact gctgaatgtc aaataaagtt acagaactgc
//
