LOCUS       XM_039096434            3093 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus spermatogenesis-associated protein
            31-like (LOC108348476), mRNA.
ACCESSION   XM_039096434
VERSION     XM_039096434.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051352.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 28% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..3093
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="17"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3093
                     /gene="LOC108348476"
                     /note="spermatogenesis-associated protein 31-like; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 EST, 2 Proteins, and 74% coverage of the annotated
                     genomic feature by RNAseq alignments"
                     /db_xref="GeneID:108348476"
                     /db_xref="RGD:11396780"
     CDS             292..3093
                     /gene="LOC108348476"
                     /codon_start=1
                     /product="spermatogenesis-associated protein 31A3-like"
                     /protein_id="XP_038952362.1"
                     /db_xref="GeneID:108348476"
                     /db_xref="RGD:11396780"
                     /translation="MELPSLPFPPTEWISLSFTTWAMDMILAFACGLGLFHLWIHFFP
                     LTSPSPAEGASTTTKRVVKRDHNKARKKIRTLKAYRGYSRKRGKDDRGLLSLLQSLLT
                     DTISFCQLLRRDASAQGSRPEAAEDHQPPRHSTEQSMANLPLVASFPLVKEHLLHKDS
                     TLSPTLLNSLTSLPCPMASPPGLEHSNMSPSSSSWYKAAARTWCHSKWSQDETLQEDL
                     HFSFQEASLWTDPGYRQLEAGEPPFIKPDVQKILELQISKRVELKLWKEQGRESFDHA
                     LSCVGDMLQSWSSEQAITCKSEQLSGLHQLFSPRVLWNKSQKDCRQLYWGLPFLHSES
                     LMATVSMVGSPLDSPAIFFNELSPYNLRQAERNAAPLLFSPKPLLQHLVPSNPLTTNV
                     PCPRSPPGSGVKTLAPEPTSLPSLQPDPPPTRDSRASCPIDSKSQLIFPVAVQHLDQH
                     LLKKNQESRSDLPSVVKMSQEVSHQLISTSLASQGQDSVLHLLKDFTDPQLKEHLEQH
                     LKTRFWKHEDQKIQLSTYLMKSEDKLPGMGHAEDNRGTSCSSALAGKSSPHAQRVSAK
                     GPEILQTGKDPCCDLTNGPGRPLRDTDGITEGSLGTVLDSIAVTEVENSVRQPRSNSA
                     GPQPGGPGEQQLQDTLRNHFSEHSHDNDSKVPVGTCPGIPGDHMVVRRENSETHLDNS
                     EIEKPETNIKTEKQKSLNDGSTFKDTSPRLPLLDPDVQQVLETHLSRHLVRHRWILPL
                     RGLRALQLFKVNKAVALSLPQPPSPSQTSLKSRDDSVTKIAAVLGDPFQKVQGTIVDA
                     CPTTSRDKRELEEEGSCDWALNAEAREVSPTQSKEHLKGIESLKVNEKQSPSRAISKE
                     PEDSVTAVFLQDCTTGMIFQDCGPEVLLEADLLASQASHTDYGLSGTRPLALHRKLEE
                     PFIFPVSGCQPRKQSQKIV"
ORIGIN      
        1 aatagggaga ttggtggtcc cctcttccca ttacccctcc cccaatctca ggggcccttt
       61 gtgacaggga cccaggagct ctgtgatgta ggcctgggag cagctgctaa cacccagagc
      121 gaaccatcag agatcagttg cctgagggca acagtgtgaa tcagtcagag aaccttctct
      181 ccctgatgca gcctgaagga atgacaaatt aaaacattcg ctcaggcatc cagtacaagg
      241 ccacgcacta ccttcacgga gtgccaggca cttgtagggc acgacggtgc catggaacta
      301 ccttcacttc cgtttcctcc aaccgaatgg atcagcctca gcttcacgac gtgggcaatg
      361 gacatgatcc tggccttcgc ctgtggactg ggcctcttcc acctgtggat acatttcttc
      421 ccactcacct caccctcacc tgcagagggc gcctccacca ccaccaaaag ggtggtgaag
      481 agggaccaca acaaggccag gaagaaaatc aggaccttga aagcttacag aggctacagc
      541 aggaagagag ggaaggatga caggggcctg ctttcgctcc tgcagagcct gcttactgac
      601 accatcagct tttgccagct cttaagaaga gatgcctcgg ctcaaggatc cagaccagaa
      661 gctgccgaag accaccagcc acctaggcat tccacagagc agtctatggc caacttgcct
      721 ctagtggcct ccttccctct ggtcaaggaa cacttgctgc acaaagattc aactttgtca
      781 cctaccctgc taaattccct tacttctttg ccttgtccca tggcaagccc cccaggcctt
      841 gagcactcaa acatgtctcc ttcaagctct tcctggtaca aggcggctgc caggacctgg
      901 tgtcattcta agtggtcaca ggatgagacc ctgcaagagg atctccattt cagcttccaa
      961 gaggcctcat tgtggacaga ccctggatac aggcagctag aggctggaga acccccgttc
     1021 atcaagcctg atgtgcagaa gatcctggag ctgcagatta gcaagagggt agaactgaag
     1081 ctctggaaag agcaaggaag ggagagcttt gaccacgcct tgagctgtgt gggtgatatg
     1141 ctgcagtcct ggagcagcga gcaggccatc acctgcaagt cagagcagct ctcaggtctc
     1201 catcagctct tttcccccag ggtcttatgg aacaagtctc agaaggactg caggcagctt
     1261 tactggggcc tcccctttct tcacagtgag tcccttatgg ctactgtcag catggtgggc
     1321 tcaccactcg actcccctgc catctttttc aatgaactct ctccttacaa cttaagacaa
     1381 gctgagagga atgcagctcc actgctcttc tctccaaagc ccttgcttca acacttggtc
     1441 ccttccaatc ctttgactac aaacgtgccg tgcccccgtt ctccaccagg gtctggagtc
     1501 aaaaccctgg cccctgagcc aacctccctc ccaagcctac aacccgatcc acctccaact
     1561 agggattcca gggcttcctg cccgatagat tcaaaatccc aacttatttt cccagttgct
     1621 gttcaacacc tagatcagca ccttttgaag aagaaccaag aaagtaggag cgatttacct
     1681 agtgtagtga aaatgtcaca ggaagtctct catcaactca tttccaccag tttagcttcc
     1741 cagggacaag actctgttct ccacctcctg aaggatttca ctgaccccca gctcaaagag
     1801 cacctagagc aacacttaaa aaccaggttc tggaaacatg aggaccaaaa gatccagcta
     1861 tctacttatc tcatgaaatc tgaggacaaa ctcccaggga tgggtcatgc agaagataat
     1921 cgagggactt catgttcctc agcactggca ggaaaaagca gcccgcatgc acagagggtc
     1981 tcagcaaaag gtccagagat actccagaca gggaaggacc catgctgcga tctgacaaac
     2041 ggtccaggaa gacctctgag agatactgat gggatcacag agggatcact gggcacagtt
     2101 ctagactcga tcgctgtgac agaggtggag aactctgtga gacagccaag aagcaactca
     2161 gcaggtcccc agccaggagg accaggagag cagcagctac aagacacact gaggaaccac
     2221 ttcagtgagc acagccatga caatgacagt aaggtgcctg tgggcacttg ccctggaatt
     2281 ccgggggacc acatggtggt ccgtcgtgaa aactcagaga cccatttgga caactcagaa
     2341 attgaaaaac cagaaacaaa tatcaaaacg gagaagcaga agtcgttgaa tgatgggtcc
     2401 accttcaaag atacttctcc tcggcttccc ttgctagatc ctgacgtcca gcaggtgctg
     2461 gaaactcatc tttcaagaca cctggtgagg cacagatgga tcttgcccct cagaggcctc
     2521 agggccctac aactcttcaa ggtgaacaag gctgtagctt tgtcacttcc acaaccccca
     2581 agtccctctc agacatcttt gaaatctagg gatgactctg ttacaaaaat tgctgctgtc
     2641 ctgggagacc cttttcagaa agttcagggg accattgtag acgcctgccc aacaactagc
     2701 agagataaaa gggagctgga ggaggagggg tcctgtgact gggctctcaa tgcagaagcc
     2761 agggaagtgt cacccactca gagtaaagaa catctgaaag gtatagaatc cctgaaagtc
     2821 aatgaaaaac agtccccttc cagagccatt tccaaggagc cagaagattc tgttactgct
     2881 gtcttcctgc aggactgtac cactggcatg atctttcaag actgtggccc agaggtcctg
     2941 ctggaggcag atctcctagc ctctcaggcc tcacatacag actatggact ctcagggacc
     3001 cgtccgctgg cgctccaccg caagctggag gagcccttta tctttccagt gtctggatgc
     3061 caacccagaa agcagtccca gaagattgtc taa
//
