LOCUS       XM_039095157             519 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus 60S ribosomal protein L21 pseudogene
            (LOC108348409), mRNA.
ACCESSION   XM_039095157
VERSION     XM_039095157.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051351.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039095157.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..519
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="16"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..519
                     /gene="LOC108348409"
                     /note="60S ribosomal protein L21 pseudogene; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 12 Proteins, and 69% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:108348409"
                     /db_xref="RGD:11416552"
     CDS             35..517
                     /gene="LOC108348409"
                     /codon_start=1
                     /product="60S ribosomal protein L21-like"
                     /protein_id="XP_038951085.1"
                     /db_xref="GeneID:108348409"
                     /db_xref="RGD:11416552"
                     /translation="MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKG
                     MGTVQKGMPHKYYHGKTGRVYNVTQHSVGIIVNKQVKGKILAKRINVRIEHIKHLKSR
                     DSFLKRVKENDQKKKEAKEKGTWVQLKRQPAPPREAHFVRTNGKEPGLLEPSPYGFMA
                     "
ORIGIN      
        1 caccgaggta gccatcttcc agtaagtcgc caaaatgacg aacacaaaag gaaagaggag
       61 aggtactcgg tatatgttct ctagaccttt taggaaacat ggagtcgttc ctttggccac
      121 atacatgcga atctataaga agggtgatat tgtagacatc aagggaatgg gcactgttca
      181 aaaaggaatg ccccataagt attaccacgg caaaaccgga agagtctaca atgtcaccca
      241 gcattccgtg ggcatcattg taaataagca agttaaaggc aagattctgg ccaagaggat
      301 caatgtgcgg attgagcaca tcaagcactt gaagagcaga gacagcttcc tgaagcgggt
      361 gaaggagaac gatcagaaga aaaaggaagc caaagagaag ggcacctggg ttcagctgaa
      421 gcgccagcct gcgccaccca gagaagccca ctttgtgagg accaacggaa aggagcctgg
      481 gctgctggag cccagtccat acggattcat ggcctaatg
//
