LOCUS       XM_039098357            4255 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus histocompatibility antigen 60b-like
            (LOC108348301), transcript variant X1, mRNA.
ACCESSION   XM_039098357
VERSION     XM_039098357.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039098357.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4255
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4255
                     /gene="LOC108348301"
                     /note="histocompatibility antigen 60b-like; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 EST, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 31 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:108348301"
                     /db_xref="RGD:11516819"
     CDS             121..993
                     /gene="LOC108348301"
                     /codon_start=1
                     /product="histocompatibility antigen 60b-like isoform X1"
                     /protein_id="XP_038954285.1"
                     /db_xref="GeneID:108348301"
                     /db_xref="RGD:11516819"
                     /translation="MAKGATSKCNHSLTLSLLVLLNSLGTMQVDGTDSLSCNFTVQYK
                     VSLGQCSVNGMTVLCFDDVRQNSPVCKTEKKGNATKLCNDLNQCLSYSFYEMMKLESG
                     LFESKGNHTLRVTVQSQYNQGEFMDGCWAFMIDRQYPFYFYPKNMTWRENQPNAIKTM
                     SQWENNRELFQSLKFLSTGDFSLCLKKLLTDSRELTRSTIKAPDTTQPTSTTQSPSTG
                     NSTPAMSSNQSPSTGNSTQPTSTTDYLIVFEFTAIFLALIVVSMEKKKVLPAAPLPLQ
                     YELQSPSPAVLEES"
ORIGIN      
        1 atgggcgtgc cacctccctg ggtagggact ggcctggtat aaatttctct gactctggtg
       61 gcaggctgca tctgatcaag ctccagtcac accataggca gcagggtctc aggaagggcc
      121 atggcaaagg gagcaaccag caagtgcaat cattctctca ctctgagcct tttggttctg
      181 ctgaactctc tgggcaccat gcaggtagat ggtacagact ctctaagttg taacttcact
      241 gtccagtata aagtctcact tggacaatgc tcagtgaatg gaatgactgt cctttgtttt
      301 gacgatgtaa ggcagaactc acctgtgtgt aaaactgaaa agaagggaaa tgctactaag
      361 ctgtgcaatg atttgaacca atgcctgagt tacagttttt atgaaatgat gaagctggag
      421 tcagggctat tcgaatccaa gggtaatcac accttgcggg tcactgtaca atctcaatat
      481 aatcaaggag aattcatgga tggatgctgg gccttcatga ttgatagaca gtatcccttc
      541 tacttttatc caaaaaatat gacctggaga gaaaatcagc ctaatgctat caagaccatg
      601 agtcaatggg agaataacag ggaactattc caaagtctca agttcctctc cacgggagat
      661 ttcagtctgt gcctcaagaa attgttgaca gactccagag aattgacaag atcgacaata
      721 aaggcaccag ataccaccca acctacatct accacccaga gtccatctac agggaatagc
      781 accccagcca tgtcttccaa ccagagtcca tctacaggga atagcaccca acctacatct
      841 acgactgatt atctaattgt atttgagttt acagcaatct tccttgcatt gatcgtggtt
      901 tctatggaaa aaaaaaaggt gcttcctgct gctccccttc ctcttcagta tgaacttcag
      961 tccccatcac cagctgtatt ggaggaatct tgaacatatt tctgtggctt ctccagcaaa
     1021 ggaacatatt tctgatgaca tctcagaaaa ccttgctgct gactttgaac cagactggta
     1081 ggaactcagg agactgatcg ctgtcagagc ctcaccaacc agggcatcag ggtgcactag
     1141 gctgttgctg tgatgactta ctcttgctct gatattcttc tgtctgacac ttacctgata
     1201 gcactgcaga gctgaagctc ggcatggctc tcaattactc ctcactgcgt aaaacaagga
     1261 cttgccctgg gtgactccat tttacaagct gcagttggct ccctcctgag tgcaatgcag
     1321 acattggagg acatgacacc tcactttaca cagagacaca tgcccaccca tttccctctc
     1381 tggtgcagag gctgataatt accttactcc acaaagtaaa aatatgtcgc ctccacagct
     1441 atcaaaatag gtgggaagca gtgcacacaa gtgcatctca aaccacatca gaaactggct
     1501 ctgaggattt atctcaccct cgcctggagc cctgaagagg ccacctgatc ctgcaaaagt
     1561 tatgtcaccc caaacttgtc ccctggctgt ttgtgtcagg gaacctgcag acagagaact
     1621 cctggccatc ttaagccctc agctccaccc acactgctaa tgtctcctcc ttgaatcact
     1681 gtctcacagc tcatctgctg ctcatgctaa tgtgggtctg catctcacct gctggatcct
     1741 cagtcctgca cctcacctgt gtagttcact cagtgttgag gcctggtgca gccctgcagc
     1801 tctccatgag ctcccttcac agctcctcta acctcctgca ttgagtctgt ctgtgtgtct
     1861 gttatccctc tgtctctgcc tcctgtctgg tcactttaca ctctaatggc taattgttca
     1921 ctcttctgca gccattctgt gatctaagtc cataagataa ctgtgtggtg ttcaatgtgt
     1981 gatctgagag tttatattag taattttctc tgtagtcaaa aagcccaggt tggccaggag
     2041 ccatttgtca aagataatta ggacgtcttg gcaattacag tcagcgaatt ggatggagct
     2101 ggtaaattaa gacatagatg cgagtacctg ttttcctagc ataactcact tattccggat
     2161 ttcattcata atactttaac caattaatga gtaaactgtc cattgggaga gaaattagga
     2221 atacccaaca ttttcaaaca aatgaaatgc tcaaagaaat tcatcatccc tttgaaaccc
     2281 tcgtcaacag ggactatgct tgctcccctg acccagtgcc tgcctcacag cactgtgaaa
     2341 cctcacactg tgcagcgtga gatctgatct ctgtttaaga acagaggtgc attccctcag
     2401 cctctcaaga ggggtgtgtc agcaaaaata aaaaacaaag tggaaaagga agtaagcaaa
     2461 cctcagatca cacatcaacg ataattaatg tatatgatgg gcatatcagt gtactctact
     2521 tcgaatttat actgtgtgaa agaaagcaaa gggaaatgct gacatccata aggaagatga
     2581 atgacagaca atgggatgtt aaatcctcaa acagtgacgc ctctagggac acataggacc
     2641 atagactgga gtacgaacac acgactataa ccgtcctagg ctagagtgca ctgacatgcc
     2701 aggaactacc aggggccatg gaataggcat aacagtgtca cattcagtga ctgaaaattc
     2761 tatatacatt ttagtaagga acaagggaca aagagcgaac tcagtcatac agtccctgct
     2821 ctttccatgt atgaggacct gacttttctc ctcagaaccc atgcacactg tggtggcaca
     2881 tgcttctaat cactgtgcag gggacagcaa gagagacgtg catctctggg gcttcctcct
     2941 cagccagtgt agttgaattg gtgagttcca gtaggactga ctcaaaacac agtacattgc
     3001 atccatggca ttctgagaag tgacatccag aggtaaagtg tagtctccgt gagtatatga
     3061 ccgagcatgc ccacatgtgt atatacacat gagaaaatga tagacactgt ggacacaaac
     3121 acagctagag acttctccag aggcaattct ccagagaggg aatgggtgtt ttatatacta
     3181 gttatgcaac attacctggc ctttttataa gaggcaaaca gctgataatt tctttggtaa
     3241 taattttcat agactatcgt tcaactactg gcctttggtt ctagggttgg gtaggattca
     3301 ccctctcgtt gtgtgaggta tcatgagaaa ctgagtcaga atctaagcat tagactctgg
     3361 ttattaaaag aggatgttat gattttactt ttgacgggag aactctttgc atctgcattg
     3421 ctgtcctgaa agctgggcag atcatgtcat caatggatga tacaaatgct tccttttgga
     3481 aggggcgtat tgctgagaat ggtacattgc gagcccggtc tggggttgtt gaactctcct
     3541 gggttcatac gaccataaaa cttatgaagg ataaccctac atttaggaga ggggaagggt
     3601 gattgttaca tgatgttgac atcactcaga gttcaagtgg tcctcggtgc ttactgtagg
     3661 tgtcggtgta gatggtagtg atggctcatc ctgccacagc actaactcca tcacagtgac
     3721 ttctaatcta gaccatagac atcatactgg agggttaagt gagaccagac aaagtcacca
     3781 aagagttaaa accagaaata ggctgtgagc aggaataaat aattgtaacc cacagtgatc
     3841 aaaggggcaa ctaccttttt tttggtttca agacaggcag gaagtatgac aatagaaact
     3901 gacaagcagc agaaatccca gaaatggaga aataagggct tcataacctg atataagggc
     3961 ctcggattaa atcctgttgt aattttggct tcttcttttt ctggaaggtt taaaactctg
     4021 cacacagaaa accagtccat gctttgtgct ttgcaaaata ggtttagatg cacaacatta
     4081 tcaagtctca cactgtcgtt ggttaatgtg ccttttcaca cccagcttca ataccctggt
     4141 gacatatatg tggtggttgt ataatgcaat atttcctgtt ttccccacaa atttaaatta
     4201 tgtaatgtgt caaatttgct tgcatttgat gaattaaaaa aagtgaatta agttt
//
