LOCUS       XM_039093897            2695 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus PHD finger protein 11-like
            (LOC108348241), mRNA.
ACCESSION   XM_039093897
VERSION     XM_039093897.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051350.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039093897.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2695
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="15"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2695
                     /gene="LOC108348241"
                     /note="PHD finger protein 11-like; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 17
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 28 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:108348241"
                     /db_xref="RGD:11360495"
     CDS             1814..2695
                     /gene="LOC108348241"
                     /codon_start=1
                     /product="PHD finger protein 11-like"
                     /protein_id="XP_038949825.1"
                     /db_xref="GeneID:108348241"
                     /db_xref="RGD:11360495"
                     /translation="MAQEEPGGSNSVLNGDANSDKKMEKWTCALCPEGHDWSVIYFAP
                     SSNIAAHENCLLYSSGLVECGPHDPRNPARSFAVKSVKKEIWRGRRLKCSFCNNKGAT
                     VGCDLQSCPKNYHLHCAKEDRAILQVDEDHGTYKLFCQRHVPGGQEPTQLDAAVKASF
                     LKKCLEAGLLTELFEQILQKMISIHGRFMDETASESDYEGIKTLLFDCGLFGDILRKF
                     QEAIKSKACECEERLNQMKQQLELLADLQQNLRSFQECGDLDPSGSTSGSLLPPEDHQ
                     CRCQESPEVQAGSGDSL"
ORIGIN      
        1 tagagtcaga aatgtgggta gagaggagtc tcctctggct tcccaggcat gtctgtccct
       61 ctgcaggtct agcactccct cacatgggat ttgggtgcag ggaactgttt gagcagatcc
      121 cttcatatct gggcggagtc tggaccacag aattcctgca gcttgagttc ccctatcttc
      181 ttgttcccag aggtcctaaa cagtttcctc ttggaccagg gatgtgggca agggtgggca
      241 gtactgacgg tctctctcaa gggtggcagt actggtgccc tgcagtctta ggagtgacca
      301 cctgtctggg cgatgagctt tctctcccac agggtttggg agcagggagc tgtgggccgg
      361 ggcaattgtt taagttaagc ataggtacga tcagggtgtt tgctgtggtt tttctcaagt
      421 tgatcgatgg ctgtttgaca ttgtcaactt gacacacctg ggaagaggaa ccttctccat
      481 acttgcctcc atcagtggct catgtgacat tttcctgact gcgggttgat ggagggggca
      541 caggccacta tgtgcagccc cagcaagggg caggtgtttg tgtgctgtag tgcacagcag
      601 ggttagagag ccaaaggaag catccagaaa gcctccctgc ccctgctttc tccctttttc
      661 tttgcatgat gactgcaact tttagtcctt tagggctgtg ggtcccctgt ctgctctgcc
      721 acagggaatg accactgctt gggaaaacag tacaagggaa gtttgactgt gcttgaccca
      781 ggcagtggcc ctgagcatgt tggacaggag agaagccctg ggatactact taggagtggg
      841 gaagcacagg ctagcttgag ggacagatgg agctggttca ctggtccctg ggctgtggag
      901 ttctcaggct cttggacacc caggcattgc tggaagtctc agaagagctg agaatagcat
      961 gtgggcccta gggctggatg tagtctgtgt ccggggcggg agggagaaag gagagagctc
     1021 tggttaatcc catgaggatg tttcctggct tgaactggtt ggcttggagg cagttgtggc
     1081 tgggagtgga gagaggcctt ctacaggaga ttagacagtg tctctgtagt gaaggacttc
     1141 tccatatgtc cccaaggtgg atcccaatga aaagagacag tccatggctc tgaatccttt
     1201 attgccatgg aggaaggtgg atgtgtaaaa ccatactaca ctgggcctga gattaaatac
     1261 cttttacaga gaggaggtct gggacggaaa gtttattggc taagccctcc atgcctccat
     1321 ttacttcact agcatggaga tctatcctga gcctacagac cacaggtcat gtccttttct
     1381 acatggggtc ttgctaaatt gcccttacat gtctattggc cataaatcta tgggggaggg
     1441 attgtggttt gtgacaggga cctggtgact gggagcaggc gaagctacta ctgtccctgc
     1501 atggtctctg gggattctag ccttagttca actgaggacc atgctacttc tcacagtcca
     1561 ctgcccaaca tagctcaaat gaagcctttc cttccttaag ttactttgga ccttgggttt
     1621 cattacatca acagagaaat taaactagag cccttttgaa aatggcaact ccgaggtgaa
     1681 aatgtgctag catactgctc tcaacttgca cttcctctca gactcctgtt tgtgggttcc
     1741 accacgattt gagaaaagga aactagaacc tagaaactta cagaggcact tcaagaagtg
     1801 caggtaccca gccatggccc aagaggaacc tgggggctcc aactcagtcc tgaatggtga
     1861 tgctaatagt gacaaaaaga tggagaagtg gacatgtgcc ctctgccctg aaggccacga
     1921 ctggagtgtg atttactttg caccatcatc gaatatagca gctcatgaaa actgtctgct
     1981 gtattcatca ggactggtgg agtgtggtcc tcatgatcca cgtaatccag ccagaagctt
     2041 tgctgtaaag tcagtgaaga aagagatctg gagagggaga agattgaaat gctcattttg
     2101 taataacaag ggagccaccg tgggatgtga tttacagtct tgtcccaaga attaccactt
     2161 acactgtgcc aaggaggacc gcgcaattct acaagttgat gaggatcatg gaacttacaa
     2221 attattttgc caacgacatg ttccaggggg tcaagaaccc acacaacttg atgcagctgt
     2281 caaagcttct tttcttaaga aatgcctgga agcaggactt cttactgaat tatttgaaca
     2341 gatactacaa aaaatgattt caattcatgg aagattcatg gatgagactg cttcagagtc
     2401 agactatgaa gggatcaaga ccttactgtt tgactgtgga ctatttggag acatactaag
     2461 aaaattccaa gaagcaatca agagcaaagc ttgtgaatgt gaagaaaggc tgaaccagat
     2521 gaagcagcag ctggagttac ttgcagattt acaacaaaac ctgcgctcat ttcaagaatg
     2581 tggggacctg gacccctcag gctctacctc aggatccttg ctacctcctg aggaccacca
     2641 gtgcagatgc caggagtctc ctgaagtgca agcaggctca ggagacagcc tgtga
//
