LOCUS       XM_017602226            1040 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus heat shock transcription factor,
            X-linked-like (LOC108348228), mRNA.
ACCESSION   XM_017602226
VERSION     XM_017602226.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051356.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_017602226.3.
            
            On Jan 21, 2021 this sequence version replaced XM_017602226.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 30% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1040
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1040
                     /gene="LOC108348228"
                     /note="heat shock transcription factor, X-linked-like;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 1 EST, and 71% coverage of the annotated
                     genomic feature by RNAseq alignments"
                     /db_xref="GeneID:108348228"
                     /db_xref="RGD:11428339"
     CDS             81..1040
                     /gene="LOC108348228"
                     /codon_start=1
                     /product="heat shock transcription factor, X-linked member
                     3"
                     /protein_id="XP_017457715.2"
                     /db_xref="GeneID:108348228"
                     /db_xref="RGD:11428339"
                     /translation="MFSALQSRVSLMASQNMGECCVTKLDLPVGQGAGKETASNSSSQ
                     LHVCSRKGLLESGNLVSAQDPALEESLQPEDQSQPTANEEGDNDLLRLPFLKKLWMIA
                     HNKAFESVNWSEDGDNIVIEVDMFQREVLQHRDARKIFEIESFKNFICQLYMHGFRKI
                     DPENSALRSGDNSKTMVYYNFNFQRDKPELLENIERSKWRNAAQVCEAQSLLTSGEDP
                     GPSPMKMKLLPTKHSPWLHKAKEGGMKLQQAFSNKEAPAGNLSKGPSCPFRKSNIPHQ
                     GAKGVATDLLVYPDITELSQSMRFHSSGSPSTADIARKFLGSS"
ORIGIN      
        1 caactgacac tagcattcag tggcaactac ttgtagggca cctctcctgg aaggataggc
       61 agtctggatt cccttgaggg atgtttagtg ctctgcagtc cagagtaagc ctgatggcca
      121 gtcagaatat gggtgagtgc tgtgttacca agctggatct tcctgttgga caaggagcag
      181 gcaaagagac agcatccaat tcttcatctc aactacacgt atgttcaagg aaaggtttgt
      241 tggagtcagg taacctagtc agtgcacaag acccagcctt agaagaaagt ctccaacctg
      301 aagaccaaag ccagcctaca gccaatgagg aaggtgacaa cgacctcctg agacttccct
      361 tccttaagaa gctgtggatg atagcacaca acaaggcctt tgagtctgtg aactggagtg
      421 aggatggaga caacatagtc attgaagtag acatgtttca gagagaggtc ctccagcaca
      481 gggatgcaag gaagattttt gaaatagaaa gctttaagaa ttttatttgc caactctaca
      541 tgcatggatt cagaaagatt gacccagaga attctgcact gcgctctgga gacaacagta
      601 aaacaatggt ctattataac ttcaatttcc agagggacaa gccagagctc ctggagaata
      661 ttgagaggag caaatggaga aatgcggctc aggtatgcga ggcacaatct cttctcacaa
      721 gtggtgagga tccaggaccc agtccaatga agatgaagct tttacctacc aagcattccc
      781 catggttaca taaggccaag gaaggtggta tgaagttaca gcaggcattt agcaacaaag
      841 aggcacctgc aggcaacctt tccaagggac cttcctgtcc atttaggaag agcaacatcc
      901 ctcatcaggg tgcaaaaggc gtggctactg acctgttggt gtaccctgac attactgagt
      961 tgtctcagag catgagattc cattcttctg ggtccccatc tacagcagat attgccagga
     1021 agtttctggg aagcagctga
//
