LOCUS       XM_039100239            2894 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus zinc finger protein 420-like
            (LOC108348215), transcript variant X4, mRNA.
ACCESSION   XM_039100239
VERSION     XM_039100239.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039100239.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2894
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2894
                     /gene="LOC108348215"
                     /note="zinc finger protein 420-like; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 19
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:108348215"
                     /db_xref="RGD:11371780"
     CDS             419..2749
                     /gene="LOC108348215"
                     /codon_start=1
                     /product="zinc finger protein 54-like"
                     /protein_id="XP_038956167.1"
                     /db_xref="GeneID:108348215"
                     /db_xref="RGD:11371780"
                     /translation="MEKEETVAKDPDTQAGYSLFFKEKIKEEKQKDMSQGLLTFRDVA
                     VNFSQEEWEYLNSAQRALYIDVMLENYSNLVSVENYCICETVLPTVKTEKDSCQGNEL
                     GEMLRGPSNCVLYKRSDTTETSNNYRYCKDRDASVDSSNPDQHTSTHTGEEPCASKNC
                     EKSFSLCSNIREDQRLYTAKKEYKQDEYDDRFSSTYSLMQQTVNMGEKPYQCGHCRRY
                     FSTASSFSIHKRIHTGEKPYKCNVCEKSFNKCTNLKTHQRLHTGEKPYKCKECGKSFA
                     QISALKSHQRRHTGEKPYKCKECDRSFAHCASLRWHQNIHSPEAHYECKECGKSFFEL
                     SRLKRHHRIHTGEKPYKCEVCEKSFTINSTLKTHQKIHTGEKPYKCSECDKSFTKCSH
                     LQRHQSVHNRERPYKCKECGKSFTKCLTLQTHQKVHNVEKPYTCMECNKSFAQVSHLR
                     THQRVHTGERPNRCKECDKSFRDSSTLRVHQKIHTGERPYKCLECDKSFTWHPHLRRH
                     QRVHTGEKSHKCKECDKCFLWISSLRIHQKIHAGERPYQCKECGKSFIWYSNLRVHQN
                     IHTAEKPYKCMKRDKSFTQYVYLRTHQRVHTGERPYRCMKCDKSFTRASTLRAHQKIH
                     TREKLYNSKDCDISFPQAPHMRTYQRVHTAERPYRCKECGKSFTQCSTLRDHQKTHTG
                     EKPYKCKDCDISFRWVSNLRRHQKIHTGEKPYQCQECKKSFIRCSYLRDHQKIHTGEK
                     PHKCKDCDISFMWISSLRRHQKIHIEEKHTIVNNVT"
ORIGIN      
        1 gcatcttgtg aataattatg ataactcata tgcatcagaa aaaggcctgc aatcctcatt
       61 tttttcttgg ttcaaggaaa acattttgcc catggagaca tgaactcaca tagaactcat
      121 cttgtagacc aggctggact ggaattcata gatttctacc catctctacc tcctcggtgc
      181 tcacattaaa gttgtgcagc agcaggaatg ttcaaactgt tgtcttttat tcttcggtcc
      241 gttgacaatt ggtggtgtga ctgtggactt ctcccaggag gagggcaatg cctggtccct
      301 gctcagaggt ctctgtacag agactgcatg ttgcagaatt aaatgagcct ggtttctgtg
      361 gggctcactg atcacccaga cctgctcacc tgtggaacag aacaaagaga cctggacgat
      421 ggagaaggag gagacagtag ctaaggatcc agatacacaa gctggctatt cattgttctt
      481 caaagagaaa atcaaagaag agaaacagaa ggacatgtcc cagggtctgt tgacattcag
      541 ggatgtggct gtgaacttct ctcaggagga gtgggaatac ctgaactctg ctcagagggc
      601 tttatacatt gatgtgatgt tggagaatta cagcaacctg gtctctgttg agaactactg
      661 catatgtgaa actgtccttc caactgtgaa gactgaaaag gactcttgtc agggtaatga
      721 gcttggcgaa atgcttcgtg gtccctccaa ttgtgtactt tataaaagaa gtgacactac
      781 agaaacctct aataactaca gatactgtaa ggacagggat gcctctgttg actcatcaaa
      841 cccagatcaa catacaagca cgcacactgg agaagaacct tgcgcatcta aaaactgtga
      901 gaaatctttc agtttgtgtt ccaacattag ggaagatcaa agactctaca ctgcaaagaa
      961 agagtacaag caggatgaat atgatgaccg tttcagctct acatatagtc tcatgcaaca
     1021 gacagttaac atgggagaga aaccatatca gtgtggacac tgcaggagat acttcagtac
     1081 tgcctcaagc tttagcatac ataagagaat tcatactgga gagaaacctt acaagtgcaa
     1141 tgtttgtgaa aaatccttta acaagtgcac aaatcttaaa acacatcaaa gacttcatac
     1201 tggagagaaa ccttacaaat gtaaagaatg tggaaagtca tttgcgcaga tatctgcact
     1261 taagagtcat cagagaaggc acactggaga gaagccttac aagtgtaagg agtgtgacag
     1321 atcctttgcc cactgtgcat cattaagatg gcatcagaat attcattctc ctgaggcaca
     1381 ttatgaatgc aaagaatgtg gcaagtcctt ttttgaatta tcacgtctta aaaggcatca
     1441 cagaatccac actggtgaaa aaccttacaa atgtgaggta tgtgagaaat cttttactat
     1501 aaattcaact cttaaaactc atcagaaaat tcatactgga gagaaacctt acaaatgtag
     1561 tgaatgtgat aaatctttta ccaagtgctc acatcttcaa agacatcaga gtgttcataa
     1621 ccgagagaga ccttacaaat gcaaggaatg tgggaaatct tttactaagt gcttaactct
     1681 tcaaacacat cagaaagttc ataatgtaga gaaaccttat acatgtatgg aatgtaacaa
     1741 atcctttgcc caggtctcac atcttagaac acatcagcga gttcatactg gagagagacc
     1801 taatagatgt aaggaatgtg ataaatcttt tcgtgacagc tcaacactta gagtacatca
     1861 gaaaatacat actggagaga gaccttacaa atgtttggaa tgtgacaaat catttacttg
     1921 gcacccacat ctaagaagac atcagagagt tcatactgga gagaaatcac acaagtgcaa
     1981 agagtgtgat aagtgctttc tctggatttc tagtcttaga atacatcaga aaattcatgc
     2041 tggagagaga ccttatcaat gtaaggaatg tggcaaatct tttatctggt actcaaatct
     2101 tagagtacat cagaatattc atactgcaga gaaaccttac aaatgtatga aacgtgacaa
     2161 atcctttacc cagtatgttt atcttagaac acatcagaga gttcatactg gagagagacc
     2221 ttacagatgt atgaaatgtg acaaatcttt tactagagcc tcaactctca gagcacatca
     2281 gaaaattcat actagagaga aactttacaa cagcaaagac tgtgatatat cttttcccca
     2341 ggccccacat atgagaacat atcagagagt tcatactgca gagagacctt acagatgcaa
     2401 ggaatgtggc aaatccttta ctcagtgctc aactctaaga gatcatcaga aaactcatac
     2461 tggagagaaa ccttataaat gcaaagactg tgacatatcc tttaggtggg tttcaaatct
     2521 tagaagacat cagaaaattc atactggaga gaaaccttac caatgccagg aatgtaagaa
     2581 atcgtttatt aggtgctcct atcttagaga ccatcagaaa attcacactg gagagaaacc
     2641 tcacaaatgc aaagactgtg acatatcctt tatgtggatt tcaagtctta gaagacatca
     2701 gaaaattcat attgaagaaa aacataccat tgtaaataat gtaacataac acttgtctgg
     2761 taatccctgc ttaaatcaca acaggagaag taatagaaat ataaagataa cacacttgtc
     2821 aaagctttta gtgaagactc aaatatcaca aaatgtatta gagtttatat taaaataaaa
     2881 ttctgtaaat ataa
//
