LOCUS       XM_039092590             783 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus high mobility group protein B3
            pseudogene (LOC108348204), mRNA.
ACCESSION   XM_039092590
VERSION     XM_039092590.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051349.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039092590.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..783
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="14"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..783
                     /gene="LOC108348204"
                     /note="high mobility group protein B3 pseudogene; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 ESTs, 17 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:108348204"
                     /db_xref="RGD:11443889"
     CDS             22..618
                     /gene="LOC108348204"
                     /codon_start=1
                     /product="high mobility group protein B3-like"
                     /protein_id="XP_038948518.1"
                     /db_xref="GeneID:108348204"
                     /db_xref="RGD:11443889"
                     /translation="MAKGDPKKPKGKMSAYAFFVQTCREEHKTKNPEVPVNFAEFSKK
                     CSERWKTMSSKEKSKFDEMAKADKVRYGREMKDYESAKGGKKKKDPNAPKRPPSGFFL
                     FCSEFRPKIKSANPGISIEDVVKKLGEMWNNLSDSEKQPYMTKAAKLKEKYEKDVADY
                     KSNGQFDGAKGPAKVARKTVEEEEEEKEEEEEEEQEDE"
ORIGIN      
        1 ccggcgaaca ctacagtcag gatggctaaa ggtgatccca agaaaccaaa gggcaagatg
       61 tccgcctatg ccttcttcgt gcagacgtgc agggaagaac acaagacgaa aaacccagag
      121 gttccagtca actttgccga gttttccaag aagtgctctg agaggtggaa gacgatgtct
      181 agcaaagaga aatcaaagtt tgacgagatg gccaaggcag ataaggtacg ctacggtcgt
      241 gaaatgaaag attatgagtc agctaaagga ggcaaaaaga agaaggaccc gaatgccccc
      301 aaaagacctc cgtctggatt tttcttgttc tgctctgaat tccgcccgaa gatcaaatct
      361 gcaaaccctg gcatctccat tgaagatgtg gtcaaaaagc tgggtgagat gtggaataac
      421 ttaagtgaca gtgaaaagca gccttacatg accaaggcag caaagctgaa agagaagtat
      481 gagaaggatg ttgctgacta taagtctaac gggcagtttg atggcgccaa gggtcctgct
      541 aaagttgccc ggaaaacggt ggaagaagag gaggaggaga aggaagagga agaagaggag
      601 gagcaagaag atgaataaaa actctgtctc cttgtgaata ccttagagta ggagagcgct
      661 gtgattgaca catctcttat ttgagtcgtg tctattgccc ttgttaggtt taattacaaa
      721 atttgatcac gatcatattg tagttgctca aagtgtcagt ggtttacatg aagtggccgt
      781 ggg
//
