LOCUS       XM_039080411            3665 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus vomeronasal type-2 receptor 116-like
            (LOC108348097), partial mRNA.
ACCESSION   XM_039080411
VERSION     XM_039080411.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051342.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 1% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: incomplete on the 5' end.
FEATURES             Location/Qualifiers
     source          1..3665
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            <1..3665
                     /gene="LOC108348097"
                     /note="vomeronasal type-2 receptor 116-like; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 Protein, and 97% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:108348097"
                     /db_xref="RGD:11482623"
     CDS             <1..2502
                     /gene="LOC108348097"
                     /codon_start=1
                     /product="vomeronasal type-2 receptor 116-like"
                     /protein_id="XP_038936339.1"
                     /db_xref="GeneID:108348097"
                     /db_xref="RGD:11482623"
                     /translation="LVFSLPVNTYPYVLVMLFAIEEINKNPNLLPNSTLGFTFLGDQC
                     DITSTNLNNLNMLSKSGEIIPNYICEYSDCDVALTGPTWTVSARVATLLQLFKIPQVT
                     YGPFHDSLSDHDLFPHLYQIAPKDTSLVLAMVSLMIHFIWKWVGLVILDDDQGVQFLS
                     DMKEEMKINEICLAFVNMIPANMQLYIERAETYYFQIMTSSAKVVIIYGNVNSTLEVS
                     FRRWEMLGIWRLWITTSQWDVISRSRDFTIDSFHGTLSLSHHYREISTFKHFIQKTNF
                     SAYPEAVSLVRLGWIYFNCSVSVSECKTLNHCLSNTILELLPWHSFDMAMNDERYNIY
                     NAVYAVAHAFHNMHLQEVDIKVWESWEGLIPRCMQVNMTLGCCKLTFKINILHINVNH
                     FLKNVRFINPIGDPVNINQGRNLDAMYDILNVLHFPQGYVLKVKVGQLSPYFAHDQQL
                     FLSEDMIEWATGSRQFSTSVCSMPCYPGFKKSHQEGKADCCFDCSRCPANEISNTTGH
                     CILWEEILQTDYLVPHALFFALPIDSEECVKCPEDWYANTEQTHCLPKAVTFLAYEDP
                     LGMALVCLALCFSVLTALVLGVFLKHRETPIVKANNRTLSYILLTALIFCFLCSLLFV
                     GNPNTTTCILQQTTFGILFTVSVSTVLAKTLTVVLAFRITVPGRRMRGLMVSRISKYI
                     IPICTVVQIILYGIWLWTSPPFVDIDTHSEHGCITITCSKGSVTAFYCVLGYLGSLAL
                     VSFTVAFLARNLPDTFNEAKFLTFSMLVFCSVWITFLPVYHSSKGKVMVAVEVFSILA
                     SSMGLLGCIFIPKCYIILLRPDRNSIQKFRDKTHS"
ORIGIN      
        1 cttgttttca gtttgccagt gaacacatac ccatatgttc tggtaatgct ttttgccata
       61 gaagagatca acaagaaccc taatctttta cctaactcta ccttgggatt tacctttctt
      121 ggtgaccagt gtgatattac atcaacaaat ctcaataacc taaacatgct ctcaaagtct
      181 ggtgagatta ttcctaatta tatctgtgag tatagtgact gtgatgtagc actcacagga
      241 ccaacatgga cagtttctgc ccgagtggca acactcctgc agctcttcaa aattccacag
      301 gttacatatg gaccatttca tgatagtctg agtgaccatg atctgtttcc tcatctatat
      361 cagatcgccc caaaggacac aagcctcgtt cttgccatgg tatccttgat gattcatttc
      421 atctggaaat gggtgggact ggttatctta gatgatgacc agggtgttca gtttctctca
      481 gatatgaaag aagaaatgaa gataaatgaa atttgtttag cttttgtgaa tatgatccca
      541 gcaaacatgc agttatacat agaaagggct gagacttatt attttcaaat aatgacatca
      601 tcagcaaaag ttgtcatcat ttatggtaat gtgaactcta ctctagaagt gagctttaga
      661 agatgggaaa tgttaggcat atggagattg tggatcacta cctcacaatg ggatgtcatc
      721 tcaaggtcca gagacttcac cattgactct ttccatggga ctttgtcttt gtcccaccat
      781 tatcgggaga tttctacttt taagcatttt attcagaaaa caaacttttc tgcttaccca
      841 gaagctgttt ctctggtgag attgggatgg atctatttta actgttcagt atctgtatct
      901 gaatgcaaga cactgaatca ttgcttatct aatactatat tggaattatt accatggcac
      961 agttttgaca tggccatgaa tgatgaacgt tacaacatat ataatgctgt ttatgctgtg
     1021 gcccatgcct ttcacaatat gcatctccaa gaagtagaca taaaagtatg ggaaagttgg
     1081 gaagggctaa tacctagatg catgcaggta aatatgactc taggttgttg caagttgaca
     1141 tttaaaatta acatacttca catcaatgta aatcactttc tgaagaatgt aagatttatt
     1201 aatcctatag gagacccagt gaatatcaat caaggaagaa atttagatgc aatgtatgac
     1261 attctcaacg ttttgcattt tccacaaggt tatgtactaa aggtgaaagt aggacagtta
     1321 tctccttatt ttgcacatga tcaacaactg ttcttatctg aagacatgat agagtgggcc
     1381 acaggaagta gacagttttc cacttctgtg tgcagtatgc cttgctatcc tggtttcaag
     1441 aaatcccatc aggaaggaaa agcagactgc tgttttgatt gttcccgatg tcctgccaat
     1501 gagatttcta acaccacagg tcattgcata ctttgggagg aaattcttca gactgactat
     1561 cttgttccac atgcattatt ctttgctttg ccaatagact cagaggagtg tgtgaagtgt
     1621 ccagaagatt ggtatgccaa cacagagcaa acccactgcc tgccaaaagc tgtgacattt
     1681 ctggcttatg aagatccttt ggggatggct cttgtctgcc tggccctgtg cttctctgta
     1741 cttacagctc ttgtccttgg ggtctttctg aagcacagag aaactcccat tgtgaaggct
     1801 aataaccgta ctctcagcta tattctacta acggccctta tattttgctt tctctgctcc
     1861 ttgctctttg ttggaaatcc aaatactaca acatgtatcc tacagcagac tacatttgga
     1921 attctgttca ctgtgtccgt gtccacagtc ttggccaaaa ctcttactgt ggttctggcc
     1981 ttcaggatca ctgttccagg cagaagaatg aggggattga tggtatcaag gatatctaaa
     2041 tacatcattc ccatctgtac agttgtccaa ataattctct atggaatatg gctatggaca
     2101 tcacctccct ttgttgacat cgatacacac tctgaacatg gctgcattac catcacatgc
     2161 agcaaaggct cagttacggc attctattgt gttcttggat acttaggatc tctggcccta
     2221 gtgagcttca cagtggcttt cttggccagg aatctacctg acacattcaa tgaagccaag
     2281 ttcctgacat ttagcatgct ggtgttctgc agtgtctgga tcaccttcct tcctgtctac
     2341 catagctcca agggaaaagt catggtagca gttgaagtgt tttctattct ggcctccagt
     2401 atgggcctgc tagggtgtat ctttatcccg aaatgctaca ttattttgtt aagaccagac
     2461 agaaactcaa ttcaaaagtt ccgagacaaa acacacagtt gaatcaatga atatttctta
     2521 aattttaaat catgtgtgaa gttattgcat agcttgaaga aaattgtttt attacaaacc
     2581 tcaaatatta gatttaacat gttatttgta tgcatacaag ttaatcatat ttaattatat
     2641 ttgttttaat tattttttat taatcatttt actcattgac atttcatatg atatcccact
     2701 tcctggtgat ccctccacaa acatttcatc ccattcattc tgtctccctt cccctttgcc
     2761 tctataagtg tgctcctcta atcacttaca tacacctgcc tcacaactcc cgcatctccc
     2821 tacactgggg catcaatcct ccacaggacc aaggacctct cctccaactg atgtcaaata
     2881 aggccatcat gttctacata tgtatttgga gccatgaatc cctccatgta tactgtttgg
     2941 tttgtggttt aatctctagg tgctcagggt ggtctggtta gttgatatcc ttcttcatac
     3001 agggttatga ttcccttgat cttttcagtc ctacccttag ctccgacact agggtccctg
     3061 tgctgagtcc aatggtgagt tgtgagtatc tgtatctgta ttaatcaggt gctggtagaa
     3121 cctctcagag aacatccata ccaggttcct gtcagcaagc acgtcttggc atcagcaaga
     3181 gtgtgtgggg ttgctatctg cagatgaaat ccaaccctag gtggggtggt ctctggctgg
     3241 tctttaattt agtctctgtt ccattttctc ctgtctttcc tttgcacagg aacatttctg
     3301 ggttaacagt ttgagatggg tgcatcctcc catctctcca ctgggggtcg tgtctgtcta
     3361 cctgaggtgt tctctgcagg ttgcagctcc cctttgctga atattttggt gaaaatgatg
     3421 gacagtgggt cctggaagcc tttgactttc ctgggatttg ggacatccta gtgcctacct
     3481 ccaggtcccc atatctcagt gctacatatt tctctaatag ttttggccct ctgtacttct
     3541 ctcttatcct ttccaatatc tgcccctgct cccccatttt cccttcccct gcctccctcc
     3601 ctctacctcc tatgattatt ttgttccccc atcttgtagg attgatgcac ctacactttg
     3661 gtctt
//
