LOCUS       XM_039094931             430 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus U6 snRNA-associated Sm-like protein
            LSm5 pseudogene (LOC103693862), mRNA.
ACCESSION   XM_039094931
VERSION     XM_039094931.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051351.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039094931.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..430
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="16"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..430
                     /gene="LOC103693862"
                     /note="U6 snRNA-associated Sm-like protein LSm5
                     pseudogene; Derived by automated computational analysis
                     using gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, 9 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:103693862"
                     /db_xref="RGD:9247050"
     CDS             16..288
                     /gene="LOC103693862"
                     /codon_start=1
                     /product="U6 snRNA-associated Sm-like protein LSm5"
                     /protein_id="XP_038950859.1"
                     /db_xref="GeneID:103693862"
                     /db_xref="RGD:9247050"
                     /translation="MAVNATTNRSQLLPLELVAKCIGSRIHIVMKSDKDIVGTPLGFD
                     DFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNITMLVPGEGPEV"
ORIGIN      
        1 acttccggcg tggccatggc ggttaacgcg accacgaacc ggtctcaact cctgccacta
       61 gagcttgtag ccaagtgtat aggatcaaga attcacattg tgatgaagag tgataaagac
      121 atcgtgggta cacctctagg atttgatgac tttgtcaata tggtgttgga agatgtcaca
      181 gagtttgaaa ttacaccaga aggaagaaga attacaaaat tagatcaaat tctactaaat
      241 ggaaataata taacaatgct ggttcctgga gaagggcctg aagtttgagt ggatttcctt
      301 gacttatgct ggattctggc tttgtttttt ttcaaacctt taatgtttag attctataaa
      361 atgaagtttc cgttaaaggg aaacactctg aagatataca tccatttttc taagctaatc
      421 atggttattt
//
