LOCUS       XM_039090084            1610 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus CD209 antigen-like protein E
            (LOC103693626), mRNA.
ACCESSION   XM_039090084
VERSION     XM_039090084.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051347.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039090084.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 16% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1610
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1610
                     /gene="LOC103693626"
                     /note="CD209 antigen-like protein E; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 2
                     ESTs, 1 Protein, and 92% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:103693626"
                     /db_xref="RGD:9362833"
     CDS             1..705
                     /gene="LOC103693626"
                     /codon_start=1
                     /product="CD209 antigen-like protein A"
                     /protein_id="XP_038946012.1"
                     /db_xref="GeneID:103693626"
                     /db_xref="RGD:9362833"
                     /translation="MAADMSEPRCWKQAMRCPVVGGGGMLLEPMQSQSQHYPGPLLVF
                     HSSLSVIVFSLNVIREDFCCKDPEHLVTHSNHYKLLVSGFFVQVLRIQAHQYEKIYKQ
                     LMQLGIGVDSLCRPCPWEWTFFHRRCYYFSKSQRNWNDSVAACQEVDAQLVTVESDEE
                     QTFLGVLLKNKSAWMGLSDLKQESTWQWVDGSPLSDRSHPITERGYYRDSRQEIKQKS
                     WRNKVHLLFTAYRLWL"
ORIGIN      
        1 atggcggcag acatgagtga gccccgctgc tggaagcagg ctatgaggtg tccggttgtg
       61 ggtgggggag gcatgctgct agaacccatg cagagccaga gccagcatta cccaggtcca
      121 ttacttgtgt ttcattcatc actaagtgtc attgtcttct ccttaaatgt tattagagaa
      181 gatttctgct gcaaagatcc agagcacctt gtaacacaca gtaatcatta caaactttta
      241 gtttctggat tctttgtgca ggttttaagg atccaagctc atcagtatga aaaaatctac
      301 aagcaactga tgcaactggg gattggagtg gacagccttt gccgtccttg cccttgggaa
      361 tggacattct tccacagaag atgttattac ttctccaaat cccagcgtaa ctggaatgat
      421 tctgttgctg cttgccagga agtggatgct caactagtca ctgttgagag tgacgaagaa
      481 cagacattcc ttggtgtgtt gttaaaaaat aaatctgcct ggatgggtct ctcagacctg
      541 aaacaggaaa gcacgtggca gtgggtagat ggctcacctt tgtcagacag gtcacatccc
      601 atcactgaga gaggttacta cagggactca agacaggaaa taaaacagaa atcatggagg
      661 aacaaagtcc acttgctttt cacagcttac agactatggc tgtgacggaa tctcatgtct
      721 ccttgtcttt gaagtttcag gaagtattgg aaaaaagggg aacctaacaa cctgagaaat
      781 caagactgtg tagagtacac atttgaaggc tggaatgaca acaaatgtga caacaagaaa
      841 ttctggatct gcaaaaaact tgaaacttcc tgctctagca agtgatgaca aaatccctcc
      901 attgccccca cagtcccaaa cccctgccag agagcagact ttacctatag caattccagt
      961 ttattctcct tgtctgtggc cattgatatc ttgaccagat ctgtgagact tttctctggc
     1021 aggtaccttg tcccaaacat tgctcctgga ccagcatgtt tccttgacct ctgctgtata
     1081 gtcttctgat gtctgcaggg tctcgttggg ttagtggttg tggcactgat tcactgttgc
     1141 cgcttaatga aatgaacaga catgatgtgt atacaggtcc ttaaatgggt tcctttcatc
     1201 ccctctgtct tcctttctga ggtcagacag tgcattacca tgcatgattg atgacacatc
     1261 ttatgtggct tcatagcatt tctgagtact ttactcccac ctactaaatt ttcatccatt
     1321 caccctgcac acatttctac aggagcattc ttagatttta ggagctcaac ttgtaggcta
     1381 aaagcacaaa agaaccaagt ccttccttct tagtcacggt ctgaaattat tgtaaaacct
     1441 tggctccatc tccacccctt tgtggacatg gtaagcctca atgttataga ccctgagatt
     1501 gaccgcctaa gttttattgc aatttttatt gaatctgctc attgacaatt tttatgcata
     1561 tgtatatata aatataagta taaataaact ctgattattg ccatccttca
//
