LOCUS       XM_039082397             532 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus 40S ribosomal protein S15a pseudogene
            (LOC103693101), mRNA.
ACCESSION   XM_039082397
VERSION     XM_039082397.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051343.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039082397.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..532
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..532
                     /gene="LOC103693101"
                     /note="40S ribosomal protein S15a pseudogene; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 4 long SRA reads, 47 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:103693101"
                     /db_xref="RGD:9187952"
     CDS             101..508
                     /gene="LOC103693101"
                     /codon_start=1
                     /product="40S ribosomal protein S15a-like"
                     /protein_id="XP_038938325.1"
                     /db_xref="GeneID:103693101"
                     /db_xref="RGD:9187952"
                     /translation="MVRMNVLAVALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMTKH
                     GYIGEFEIIDDHRAGKIVVNLTGRLNKYGVISPRFYVQLKDLEKWQNNLLPSWQFGFI
                     VLTTSAGIMDHEEARRKHTGGKILGFFFFKCKA"
ORIGIN      
        1 atcttctcat agggctggga taactgtaga gctagagtga taactcagca attaagattc
       61 tatagtggga ctctttctgc catcttctct cactgtcacc atggtgcgaa tgaatgttct
      121 ggcagttgct ctcaagagca tcaacaatgc ggagaagagg ggcaaacgcc aggtcctcat
      181 caggccgtgt tccaaagtca tcgttcggtt cctaactgtg atgacgaagc atggctacat
      241 tggtgaattc gagatcattg atgatcacag agctgggaag attgttgtga acctgacagg
      301 aaggctgaac aagtatggag ttataagccc tagattttat gttcaactca aagacctaga
      361 gaagtggcag aacaatctgc tcccatcatg gcagtttggt ttcattgtgc tgacaacctc
      421 ggctggcatc atggaccatg aagaagcaag acgaaaacat acaggaggga aaatcctggg
      481 attctttttt tttaaatgta aagcataaat aaaaagcctc tgtggactgt ga
//
