LOCUS       XM_039092569             657 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus 40S ribosomal protein SA pseudogene
            (LOC103693045), mRNA.
ACCESSION   XM_039092569
VERSION     XM_039092569.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051349.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039092569.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 8% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..657
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="14"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..657
                     /gene="LOC103693045"
                     /note="40S ribosomal protein SA pseudogene; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 5 Proteins, and 95% coverage of the annotated
                     genomic feature by RNAseq alignments"
                     /db_xref="GeneID:103693045"
                     /db_xref="RGD:9279922"
     CDS             1..375
                     /gene="LOC103693045"
                     /codon_start=1
                     /product="40S ribosomal protein SA"
                     /protein_id="XP_038948497.1"
                     /db_xref="GeneID:103693045"
                     /db_xref="RGD:9279922"
                     /translation="MTLTAGFSMATIRMRGTISREHPWEVMPDLYFYRDPEEIEKEEQ
                     AAPEKAVTKEEFQGEWTAPAPEFTAAQPEVADGSEGVQVPSMPIQQFPTEDWSAQPAT
                     EDWSAAPTAQATEWVGATTEWS"
ORIGIN      
        1 atgacgctga cggcagggtt ctcaatggca acaatccgca tgcgaggaac catctcccgg
       61 gagcacccat gggaggttat gcctgatctt tacttctata gggacccaga ggagattgag
      121 aaggaggagc aggctgctcc cgagaaggct gtgaccaagg aggaattcca gggtgaatgg
      181 actgcaccag cacctgagtt cactgctgct cagcctgagg tggccgacgg gtctgagggt
      241 gtgcaggtgc cctctatgcc catccagcag ttccccacgg aagactggag tgcacagcca
      301 gccactgagg actggtcagc agctcccaca gcacaggcca ctgagtgggt tggagccacc
      361 actgagtggt cctgagctgc tctgcaggtg cctgaaccaa gggaaaaaag gtggaaggaa
      421 aataaagttt ctgaaagctg gaaaaaaaaa aaagaaaaga aaagaaaaat taattacatt
      481 gcaaaagctg gaaaactcgg ccaaaccatt atttttgaaa aggtaaatga aaattccaga
      541 ttttggcttc aggtaaggct tgcttcagca gatcagagca cttgccaagg ctttcgtttc
      601 tccctgccct ctgtgataga gcagacacca cccggaacct tcctaaagct cacccgc
//
