LOCUS       XM_039080619             548 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus tubulin-specific chaperone A
            pseudogene (LOC103693000), mRNA.
ACCESSION   XM_039080619
VERSION     XM_039080619.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051342.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039080619.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 10% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..548
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..548
                     /gene="LOC103693000"
                     /note="tubulin-specific chaperone A pseudogene; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 8 Proteins, and 92% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:103693000"
                     /db_xref="RGD:9197485"
     CDS             1..408
                     /gene="LOC103693000"
                     /codon_start=1
                     /product="tubulin-specific chaperone A-like"
                     /protein_id="XP_038936547.1"
                     /db_xref="GeneID:103693000"
                     /db_xref="RGD:9197485"
                     /translation="MEEKFFHFFGPWLIKTGRQIKIKTGVVKRLVKEKVMYEKEAKQQ
                     EEKIEKMKAEDGENYAIKKQAEILQESRMMIPDCQLRLEAAHTDLQQILESEKDLEEA
                     EEYKEALIVLDSVKLEAWRFSVRHGFFFFFFLH"
ORIGIN      
        1 atggaagaga agtttttcca cttcttcgga ccatggctga ttaagaccgg gaggcagatc
       61 aagatcaaga ccggagtggt gaagcgactg gtcaaagaaa aagtgatgta tgaaaaagaa
      121 gcaaagcagc aagaagagaa gattgagaaa atgaaggctg aagatggtga gaactatgcc
      181 attaagaagc aggcagagat cctgcaagag tcccggatga tgatcccaga ctgccagctc
      241 cgtttagagg ctgcacacac tgatctccag cagatactgg agagtgaaaa ggacttggaa
      301 gaagctgagg agtacaaaga agcccttata gtgctggatt ctgtgaagtt agaggcctgg
      361 cgtttttctg tacggcatgg tttttttttt tttttttttt tgcattaaat cctggggtct
      421 attctacaat tcgtcatttt cggccactgc tgtgtttaat aatatgaaaa cgtggttctt
      481 tttatgcagt tgcatatatt tttctttgca taacttaatg tgtcaaataa atgagttcat
      541 ctaaaaaa
//
