LOCUS       XM_039080080             713 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus 60S ribosomal protein L9 pseudogene
            (LOC103692829), mRNA.
ACCESSION   XM_039080080
VERSION     XM_039080080.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051342.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039080080.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..713
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..713
                     /gene="LOC103692829"
                     /note="60S ribosomal protein L9 pseudogene; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 15 ESTs, 41 long SRA reads, 41 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:103692829"
                     /db_xref="RGD:9187595"
     CDS             40..606
                     /gene="LOC103692829"
                     /codon_start=1
                     /product="60S ribosomal protein L9-like"
                     /protein_id="XP_038936008.1"
                     /db_xref="GeneID:103692829"
                     /db_xref="RGD:9187595"
                     /translation="MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVE
                     LSLLGKKKKRLRVDKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPIN
                     VVIQENGSLVEIRNFLGEKYIRRVRMRTGVACSVSQAQKDELILEGNDIELVSNSAAL
                     IQQATTVKNKDIRKFLDGIYVSEKGTVQ"
ORIGIN      
        1 taagtggcac gttctctctt tgccccatct actgcgagaa tgaagaccat tctcagcaat
       61 cagactgtcg acattccaga aaatgtcgac atcactctga aggggcgcac agtcattgtg
      121 aagggcccca gaggaactct gaggagggac ttcaatcaca tcaatgtaga gctgagtctt
      181 cttggaaaga aaaagaaaag gctccgtgtt gacaagtggt ggggtaacag gaaggaactg
      241 gccactgtca gaaccatctg cagtcatgtt cagaacatga tcaagggtgt gacactgggc
      301 ttccgttaca agatgaggtc tgtgtatgct cacttcccta tcaacgtcgt tattcaggag
      361 aatgggtctc tggttgaaat ccgaaatttc ttgggtgaaa aatacatccg gagggttcgg
      421 atgaggacag gtgttgcttg ttctgtctct caagcccaga aggatgagtt aatccttgaa
      481 ggaaatgata ttgaacttgt ttcaaattca gcggctctga ttcagcaagc cacaacagtt
      541 aaaaacaagg atatcaggaa gtttttggat ggcatctatg tttctgagaa gggaactgtc
      601 cagtagcctg acgaatgaga cctcagtttc ctagcttcag aaacaagatc ctgataacaa
      661 gtacagtttg ggctctgtgg aaacaataaa agacttatat attgaaaaaa aaa
//
