LOCUS       XM_039111575             674 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus 60S ribosomal protein L9 pseudogene
            (LOC103692519), mRNA.
ACCESSION   XM_039111575
VERSION     XM_039111575.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039111575.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..674
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..674
                     /gene="LOC103692519"
                     /note="60S ribosomal protein L9 pseudogene; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 long SRA reads, 44 Proteins, and 90% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:103692519"
                     /db_xref="RGD:9461644"
     CDS             1..579
                     /gene="LOC103692519"
                     /codon_start=1
                     /product="60S ribosomal protein L9-like"
                     /protein_id="XP_038967503.1"
                     /db_xref="GeneID:103692519"
                     /db_xref="RGD:9461644"
                     /translation="MKTILSNQTVNIPENVDITLKGCTVIVKGPKGTLRRDFNHINVE
                     LSLLGKKKKRLRVDKWWGNRKELATVRTICSHVQNMIKGVTLGFCYKMRSVYAHFPIN
                     VVIQENGSLVEIRNFLGEKYIRRVQMRTGVARSVSQAQKDELILEGNDIELVSNSAAV
                     IQQATTVKNKDIRKFLDGIYVSEKGTMQQPDK"
ORIGIN      
        1 atgaagacca ttctcagcaa tcagactgtc aacattccag aaaatgttga tatcactctg
       61 aaggggtgca cagtcattgt gaagggcccc aaaggaactc tgaggaggga cttcaatcac
      121 atcaatgtag agctgagtct tcttggaaag aaaaagaaaa ggctccgtgt tgacaagtgg
      181 tggggtaaca ggaaggaact ggccactgtc agaaccatct gcagtcatgt tcagaacatg
      241 atcaagggtg tgacactggg cttctgttac aagatgaggt ctgtgtatgc tcacttccct
      301 atcaacgtcg ttattcagga gaatgggtct ctggttgaaa tccgaaattt cttgggtgaa
      361 aaatacatcc ggagggttca gatgaggaca ggtgttgctc gttctgtctc tcaagcccag
      421 aaggatgagt taatccttga aggaaatgat attgaacttg tttcaaattc agcggctgtg
      481 atccagcaag ccacaacagt taaaaacaag gatatcagga agtttttgga tggcatctat
      541 gtttctgaga agggaaccat gcagcagcct gacaaatgag acctcagttt cgtagcttca
      601 gaaacaagat cctgataaca agtacagttt gggctctgtg ggaacaataa aagacttata
      661 tattgaaaaa aaaa
//
