LOCUS       XM_039108946             438 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus 40S ribosomal protein S12 pseudogene
            (LOC103692210), partial mRNA.
ACCESSION   XM_039108946
VERSION     XM_039108946.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051339.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039108946.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 2% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: incomplete on the 5' end.
FEATURES             Location/Qualifiers
     source          1..438
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            <1..438
                     /gene="LOC103692210"
                     /note="40S ribosomal protein S12 pseudogene; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 20 Proteins, and 77% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:103692210"
                     /db_xref="RGD:9472652"
     CDS             <1..408
                     /gene="LOC103692210"
                     /codon_start=1
                     /product="40S ribosomal protein S12-like"
                     /protein_id="XP_038964874.1"
                     /db_xref="GeneID:103692210"
                     /db_xref="RGD:9472652"
                     /translation="STAVAEEGIAARGVMDSNTALQEVLKTAIIHDGLARGIRKAAKA
                     LDKRQAHLCVLASDCDEPMYVKLVEALCAEHQINLIKVDDNKKLGEWVGLCKIHREEK
                     PRKVVGCSCVVVKDYGKESQAKDVIEEYFKCKK"
ORIGIN      
        1 tccaccgccg tggctgagga aggcatagct gctagaggtg taatggactc caacactgct
       61 ctacaagagg tgctgaagac cgccatcatc cacgatggct tagcacgtgg catacgcaaa
      121 gctgccaaag ccttagacaa gcgccaagcc catctctgtg tgcttgcatc cgactgtgat
      181 gagcccatgt atgtcaagct ggtggaggca ctctgtgctg agcaccagat caacctgata
      241 aaggttgatg acaacaagaa actaggggaa tgggtaggcc tctgtaaaat ccatcgagag
      301 gagaaaccac ggaaagtggt tggttgcagt tgcgtagtgg ttaaggacta tggcaaagaa
      361 tctcaggcca aggatgtcat cgaggagtac ttcaaatgca aaaaatgaat aaataaaatt
      421 ttggctcaaa aaaaaaaa
//
