LOCUS       XM_039108556            5920 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus transcription elongation factor B
            polypeptide 2 pseudogene (LOC103692036), mRNA.
ACCESSION   XM_039108556
VERSION     XM_039108556.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051339.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039108556.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5920
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5920
                     /gene="LOC103692036"
                     /note="transcription elongation factor B polypeptide 2
                     pseudogene; Derived by automated computational analysis
                     using gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:103692036"
                     /db_xref="RGD:9334471"
     CDS             4168..4578
                     /gene="LOC103692036"
                     /codon_start=1
                     /product="elongin-B-like"
                     /protein_id="XP_038964484.1"
                     /db_xref="GeneID:103692036"
                     /db_xref="RGD:9334471"
                     /translation="MFLMIQRHKTTIFTYTKELTTVFELKRIMEGIRKPPPEEQRLYK
                     LLNDGKTLGKCGFTSQTAGPQAPATVGLAFRADDTFEALCIEPFSSPPELPDVMKPRD
                     SGGSASAQAVQRGSQAYPLGTQSPNKKRFGGLGI"
ORIGIN      
        1 ggctcacatt gccaagctgg aaaagacaaa ggctaaagaa ctcgccacta aaccaggtta
       61 aatgtacact tacgttttct gtacataaat gtaatttaca aaattaaaaa aaaaaatgtc
      121 tgtgggaagt taaaggagaa acgaggtcac acgtgtaaga actggtgtgt gaggggcagg
      181 ggtgacagtg aagaggaaaa agcaaaataa ggttgaaggc aacttctcag tgaggtcccc
      241 acagcgactg agagtaaaga aaggagagcc gagccagcaa gcacaacatt tcctgtgctc
      301 ttcggttcgt taaagagaga ttccttatct ccgtccattg ttactccagt acgacaggat
      361 gtttatggag gcttcactgt ccaagtcttc atgacggaac aacctgtgta aaatgttcaa
      421 actagctgga gacatactac gctgacgata caggccctcc cccgtgtcac atgacacttc
      481 cagcatcact actgtggtgt gctggggtgt tgggtccaca aaacagagta atcttgtaca
      541 agctgtagta ccactgagtc cccataccga ctatgttgct gtatcggcac tcgtgttaaa
      601 actctgtcca tgtgtcctac agtagagact caaagcctct gagccctgcg gacagccagc
      661 ttactaccaa gtttttaatc agagaatctg atgtttgact ggtcctgtac atggatgtga
      721 cttactaaaa ttgcttgccc ggctaaacgt aagtcatcct ccattgaaaa gctaagctga
      781 agcgagggga gacctcctac atgcagtgca atgtactgag ccctcagagg gcgaacttgg
      841 agagttatag tttctatcat tgctttctgt gatttctttt ttcagcacaa ttagtttttt
      901 aaagctgctt tgcttagaga tgagagagac tcctttttat tttgaattcc gaagtttaaa
      961 gccccctgtg cttttgaagc gatttctgtt gccttgtatt tctatttatt taaagggcaa
     1021 atgcgcaaag ttagaggctc ccacatactt ggtagccggt tttgatgcac tgccagcact
     1081 gattcctaag taaccccgct taccctaacg ccgtgctgtt ctgatgcaaa ttcgagacgc
     1141 cgtagcattt caaccgcaaa tatttcagtg cacgtcacta gacaggaaga gcattttgga
     1201 cagctgtgat gtaattatcg cagctaaaga tggcaatttc ttgttcgtaa cgtcttcaat
     1261 attcatcgct caaaagttcc cggcaactca caaaagtgtc ataaagcttc tgcaactcag
     1321 gatacaaacc aggatcattt aagcctctca ggcctcctct aaagtatctc ctccagtttc
     1381 actgagtgtg acggcataga actgtcctct gtgaggcggg tcatagggcc ctctccttgc
     1441 tgatgacaga aagattcgat ggcttctggg gtacgctgaa gcgtatcact tcccatcagg
     1501 tcacacatgc actctccctc accaacagaa gtactccaaa accttaacgt catggaccct
     1561 gagcctggcc gtgagctgcc agaatgctag catgtcaagc atttcagctg ttggtctcgg
     1621 tttccgtctt ccctcaagac caccaacacc acattcctat ctttgctgat gggctgtcag
     1681 aagcattgta tacctcgcac cagaccaacc ccctacaaac ctctggctct cttcctcctt
     1741 ttagtagaca gagctggaca aaggggttat ctgtttcccc ccatgtcgta cactcagggg
     1801 ggcgtaccta ggtacagtga aggtcactgt tcatctcctc tccagagaaa aggaaagcct
     1861 agtggagtgg ctcatttaaa tgctcctttt gctaactgat tggtttttca tgagttgtga
     1921 taaagtaatc ctggaggctg gataaacact gtatatgctg tgtgtgtgtg tgtgtgtgtg
     1981 cgcgcgcgcg cgcgcacgct atatatatat aatatatagt atatataaat aaatatatat
     2041 atatatttaa atatatagca gtacctagta taagctgaat gatccttgcc ttttcttgct
     2101 ggttgttact gaatccgtgt atgatgaagg ccctcggccc cgccatcttc gtcagcagat
     2161 taagaattag cttgggaatt tgatgtatct ctttgaggga aaacgtaatg tcaggtaaaa
     2221 tcagaaaggc tgagatggtt agctgtggtt tctttcaaag gagctcttcc caataaagtc
     2281 ttcctgggta aaccgagtca tcctgcagca tctaagagga tgaaaagcac actgaagcct
     2341 gttaaaatgg tggggccaca tcacggggga ggcgagggga agacaggaag gcttagcgct
     2401 ggaattcacc gacctgtgcc tttgaagcac ccccaatgtg ttgacgggga gaaagtggta
     2461 tgaactcaga aaataatcag aaggagagat ttcaagggta tgtgagaata agaaatttgc
     2521 tctggggccc tttcgcctcc aactcggaga agcagcagct ggtggcaacc atcattctac
     2581 gggaccttca ggataagcaa tgacagccgc ggagggagac gccagagcgc tcgtaggtct
     2641 tggtaaacat gaacaactaa ttaattttca caacaccctt gtgagtcagg gagcagcgtt
     2701 ttctgagctt tgcagatggg aaagtgtcag catgtagatc taagtgattt ggcccctctc
     2761 gcagtgaggc caggcagggc tgggaataag tcgtttcact ggaaaggctt agaggttgaa
     2821 ttcaacttcc atattctctc tctcacttct tccctttaat gaaaatgctt cttctccctg
     2881 tgaaataata ctggatggtg catttgccta tgagggcgtg actaccagat atcgtcgcta
     2941 ttcctaagaa tataaaacca ttgcatttca aagggggagt tcagaaattg tcatatctga
     3001 cctccttatt gtgtcgaaac actcacttgc tcaccatgaa catagagctc gctggtgcca
     3061 gagtacaaat tagagcactc gcttatcttt agacccattg gccaactcca gttttagtac
     3121 agtcttcaca tggtctccta ctgattcctt ttctgtggaa ctccagagag aggcatagac
     3181 tgaaaggggg ccgggttgga agtctccaca aaagctgtca cctccagcaa ttcatctggc
     3241 tctcaaatct cctgttcagt ctttctgttc agaggctgcc cagactgtga ctgaacaaaa
     3301 ccagtcatca aaaagccacc acctgctagg caacccgtgc cacctctcca gcctcctcca
     3361 gcaaccatca aactactgtc cctgccctgc tgaccctagt ttccccctcg gccacctgca
     3421 aggtgtcttt tatttgcttt ttctgggaat ctcttttgct gtcgacttaa tattctctca
     3481 gtagatgttt atgaaatccc atttataagg gccacagaca gtgaaatgat gaacagagaa
     3541 aataattaac aaaagaaact gctttaaaaa tggacacttt ataaggtgac aagggctttg
     3601 gtaaacacgt gtgatattgg ggacaggaaa agttgattac ttgttattat agataagcac
     3661 cgaggacaca aaacaatatt cctggccttt cagaaaattt gtgattaaaa aatcaggaga
     3721 cagaataaac tatatgcagg ctgactatgt atcagaatag atggttatga gctatgagag
     3781 tgtggtgctc cactgggtga caaaatgttg ctgtgtagaa acagaatagt aataaattcg
     3841 gtcattaata agagcagagg tactgagata tacagcccta gtggggggcg ggcatcgata
     3901 caacatgggc tccctgcgga aacagtggcc cctgaatatc agttccctgt ccctgtagag
     3961 ccccatgcag agttgagcca aaagggatct gcaccacatg ctgccttatg acttaacatg
     4021 ccaggaagga accgtgtccc cctgaaacat cacacataca tgctaaactg cgttagacac
     4081 cacataagag cagattgctg tgggtccgaa tagtatgaca caaatgccat ttttaaaagg
     4141 gttagagagt cgccgggatg gacccacatg tttctcatga tccagcgcca caagaccacc
     4201 atctttacgt ataccaagga gttgactacc gtgttcgaac tgaagcgcat catggagggc
     4261 atccgcaagc cgccgccaga ggagcagcgg ctgtacaagc tcctcaatga tggaaaaact
     4321 ctgggcaaat gtggcttcac cagtcagaca gcagggccac aggccccagc cacagtgggc
     4381 ctggccttcc gagcagatga caccttcgaa gcgctgtgca tcgagccctt ctccagccct
     4441 ccggagcttc cagatgtgat gaagccacgg gattctggag gcagcgccag tgcacaagct
     4501 gtgcagcgag ggtcccaggc ctacccgcta gggacccagt cccccaataa aaaaagattt
     4561 ggggggttgg ggatttaact cagcggtaga gcgcttgcct agcaagcgca aggccccggg
     4621 ttcggtcccc tgctccggaa aaaagaaaaa gatttggctg tctaaaaaaa gggggcgtgg
     4681 ttagaaagaa aatgtctctt tgaggaccgc cgttccctgt gagaccgtaa aggacacgca
     4741 gagatagaac gagtagagag agtgcgcgct cctggagggg aaaacacaaa ttcagaaagg
     4801 tagggacgag tccagtgtgc tctggaactg tgcttaagaa gggaggccaa aagacaggct
     4861 tggtgtttaa actcaatgca gcaggaaatg aaagatccaa ggcaaggaga cgcctctgct
     4921 gagcatgcgg gagctggaga gcaaggactg tgagaagtca gcttatgcca agatgctcag
     4981 gacacacact ggactgggct gtttcccaga atgaaactct taagttctag gctgttctct
     5041 ttggattatt gaccacattt tatgttcgta ccttcagtta ggaaacgtaa ggctgtttct
     5101 gttgtttcac cttttcccct tcctgaaact catatttccc tgatcaaaat attaaaccct
     5161 ttagcataaa gtatgcctgg ctcagtaaat acaattcatt cctctgtcag ttctgaaggc
     5221 ttgcacgaga ccccggtatt gtttggtttt tactgccatc tagtggctct gaacatgttt
     5281 gttgtttgcc aaacaagatg ctctccaaac tgcgaaggag agcggcgttg ctgcttctgg
     5341 aatggagaac ttctgggtta catggattta ttccgtaaaa ataagcccat ctttatttct
     5401 cacccccccc tctcttctcc atatgtaatt atctagggtt tcactgacct ctgttttatg
     5461 gaggtctgta aacttccatt aggaaaactg ctcctggatg ctgagtcgag gtggatgccc
     5521 ttaagagcaa gggaagagca tgaaactcag cccacattct gtcctaagtt agaggcagaa
     5581 gggttacagc cgctcgaggg cagacatcct tctccgagtt tacagccata acatctcctt
     5641 acgatggctt ccacgcaaaa ctcagaccct tattgttccc caaggctcct tagcctgtga
     5701 tgtcatcttc ttttacaaga cccggcaaga tcccaggggc gaaatgcatg ccgaatctat
     5761 ttgtctggct tatagtgtta actagaggtt tgcgtgggct atggcagtaa tgaatgtgct
     5821 tttgaaaaca ggactgggag tgtgcacctt tgtgctgccc tcctcgagct ttctagaata
     5881 cattttcttc ctgtcgagtt cttcattgta aatctcttct
//
