LOCUS       XM_039108986            6148 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus macrophage migration inhibitory factor
            pseudogene (LOC103692026), mRNA.
ACCESSION   XM_039108986
VERSION     XM_039108986.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051339.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6148
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6148
                     /gene="LOC103692026"
                     /note="macrophage migration inhibitory factor pseudogene;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 16 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:103692026"
                     /db_xref="RGD:9400372"
     CDS             4069..4470
                     /gene="LOC103692026"
                     /codon_start=1
                     /product="macrophage migration inhibitory factor-like"
                     /protein_id="XP_038964914.1"
                     /db_xref="GeneID:103692026"
                     /db_xref="RGD:9400372"
                     /translation="MICEFGPHRSLHHPPVPARSPSATMPMFILNTNVSHACVPEEFL
                     FEITQHLVQATGKPAQYITVCMVPDQLLNFMGLSDLCALCTLHSIGKILGARTSPTAS
                     CCACSLLSDHLHISPGRIYINYNNMNTANSG"
ORIGIN      
        1 cgctgagcta aatccccaac cccttgtcca cacttcttta ctggcaaatg ttcgttttag
       61 tgagtcattg gtctggctca aggcctctgg tttctactac actatcaata ctggaacctc
      121 tccaatctcc tgttgatgct ctgtgcatgg agatcctaca gctttggatc tacaggactg
      181 gccccttcac acaatccaac agttcataga tgggatagat gttggggagg gcaacccaaa
      241 gccctagatc cggtcttgag aagtatctga gttagtcagc ccaccatctg tcctacaccc
      301 acaccaccag gacaagctct ccagcattac cctggctacc tcagcagcct gggtcctctc
      361 agatcttaca agccacacat aaatcaagtc ccaatctctt gttcagaaga aagagtgaga
      421 tgtcatgtag catagattac acattaacta aacgtgattc tacatgaggc cagctctgcc
      481 ccttcactcc atctcctaag agacctctga aagaagaccc ctcactttgg ctcttcagcc
      541 tgagactcct acttcagacc ctgatattta gcttccattt ttatagtccc ttaccataaa
      601 aaaaaagccc aattcagcat cgccttcttg aaccctcctc ctaacagaga tagacctaaa
      661 gtctatcatt ctttctgctc aaacttcatg gtccctctgt gttgtctggc agccatgaag
      721 ctcttggggt atcaagtttt gattgcctcc tcatgccagc cctacaagaa ctcaggatcc
      781 tacagccgtg gttccattac ctcttcagtt caccacagga aagagcaggc tgcgttagat
      841 ggcacaactg tgctgcaaag tgaatgaaaa tatcaagaga gatcagaaag aaatcagaat
      901 cctcattccc ctgttgccta gaggtagaga agaaaccatt cttggggctc ctcctcctga
      961 gggtgggttc acctccagaa ttttaatggc agcctctttc ccatgctgtt tctcactctc
     1021 aggcaggcag aacacgtttg gtgagtaaga ctcatgactc agcctttcat cctgcaatca
     1081 catatatttt taatttaagt tctgtgcaat ttggctaaca ttaactttat tgggtaattt
     1141 cctcattcgg agtgctttcc acagagctgt tgatagggat gccagtctac agaagatgtg
     1201 cttgctgaca gcaatacaaa aagaggctga ggtaggtttt ccttttaacc tattcattac
     1261 atttttataa gccatctccc cttgtgggct ttcccttgta gtttgcaagg gaccacagct
     1321 gttagaaagc aaacgcagac tcccaatctc actgttaccc aagccagctg cctctgagcc
     1381 agagaaattc cctgaaggct ttctcatcca cacaggaatt gtcaggtcag tgaggcacca
     1441 ccacctggca agctagccaa agacatcggg gcaccactgg ggaaggacac gggtgtgttc
     1501 tgccctgaga caaaaggact gtctgtgtag ggctaggcag acctggctgt ccatattcat
     1561 gatcagcaac ccctaggagg gtatataatc ttaacatgaa gccccacatg atcctgaagt
     1621 taagtaaata tgttctcttg ttaggtacgt ttgcgataca tgaggcagac ttcatgcttc
     1681 ttaaagaaca aagaggcata gccacatgca taggattctg agaactatac ctggctatta
     1741 ctgattggat catgtcatcc caaaacattt tatttgttga agtctaatag tgtgacctca
     1801 gaatgtgacc ttatctgaaa ataagactgt tacatgtgaa atcagttaag atgatgttgc
     1861 aatgatgctg tgtgagcccc tgatccttgc cttaggaaaa gaagaaatgt gagcggggca
     1921 tggtggtctg tgtgtgtggt cccagcactc tggagactgg ggtaggttta tcctgaattt
     1981 gtggtgacca caaatgggat gcagagcgag ttccaggaca acccaagcct ggaaacactg
     2041 tctcagaaaa gaaaaaggag gtgtgggcag agacctacac tgggacagca ctgtgcaaac
     2101 ttgaagacag aagacaacat gagccttccc cagcatggat cccttgaaag tttccagcag
     2161 accaccggaa gccaggacac agagtagagc agcttcccct tgggagcctt caggactaac
     2221 tgaaccctgc ttcagacctc caacctccag aactatgaga cactcagttg ttgctctgta
     2281 ggtcaccagg ttataatatt gtgttacaac caccctagaa aactaacaag aaggccagac
     2341 aggttcccta aatgaagcag atagttagca gtgagaccag aaagatagat caaacgtccg
     2401 gcctggggtc gaccagcagg cccagtgtca gctcatctgc ttcaggtggc agaaaaatga
     2461 cacagaaaga aagaaggctg gctgaagaaa cagaagatga gagagggcat aatgtactct
     2521 ctcctgtttt ttaatagaac tctcgtgaat gagaattgaa aagatattgg cccccattaa
     2581 agttgctaag tttgctttgt gagccatcac ctgaccttaa gagtgaatcc ccagtaaata
     2641 tactgatgag taatctaaca cagacatgac cagtgtgtcc acctaaaact caatgtaggc
     2701 agaacttggc ccctggcagc caatccagac tctagttcta acctctttgc tatctctttc
     2761 ctggctttta ccctggggat gaaagcaact gcacagcaca agggcaagtg atttcccaga
     2821 tttcccagtg attaaacccc agtgaagctc tacgcaaagg cttatcactg tgccctgatg
     2881 ttttttctac actctggctt tttaggggga aaaaaaagta ctttgattgc ttcaaatctg
     2941 gacaccaaga tacgatccaa tttattcaag tatttttata tagctggttc tttctgatca
     3001 tggagtttgc tctaaggatc tctctttgca gtacaaagag catgtgggat taaaaacctc
     3061 tttggaatgg aagtcttagc atcttcatac attagagcag acccacttgc cttcctcttt
     3121 gatgcaaggc caacggggag tcttcaccac tgaggtaaag ccttcacagc aaactactgg
     3181 cttttctggg gcaggtttga tcccaagggt cctgccctgt gctggcatac aagccagagg
     3241 tcccaaccca ccaaggctca aaaaatcagg ttaactatcc tatgctacac attaggcagc
     3301 caaacccagc tactgatttc tgtagctcct aaccaggtaa tatctccaag aggactgaga
     3361 catctttgtc tcccggtatt cccaatgtgt gccccaatac aaaatatttt tgtacaaaga
     3421 aaaagaattc ctgtcacttg tgtgagaact gggagtcaga tggagaaaaa ctagggagta
     3481 caaccttata taatgttaga aatggtttgc aggagtgtaa aataccctct catgctagac
     3541 agaagaatgt catttaaaac ctcaaagatt tttttgcttg ccctgaagca agtcgctact
     3601 gtaatacttt aactggaacc ttttattgca ttagtcactg actttaaaaa tgcaaatctt
     3661 ttgaatataa gcaacataaa aggcttattc ttcagggttt cttcttctag agtctctgaa
     3721 ttttcgctta catctttttt ctcagcttat cagaacatga agaaatgcac gcccatgttt
     3781 cttttgaatc ttcattgtcc atgtgtattc taaaaggcgt ctcacttaga atctgaaaat
     3841 gcattgtttg gaagggaaaa aattagttcc aaaatagcct acactcatac tttcaagttt
     3901 aggtgtacag attggttggc actagatatt ttttaaaagg atgaatattg agtttttaat
     3961 tgactggatg gagaatatgt cctaaatata aacaagtagg aactcaaagc tgttggggct
     4021 accgctaaaa ctatataccc atgtggataa aaaaatgcat ttaaaaatat gatttgtgag
     4081 tttgggccac accgctcttt gcaccatcct ccagtccccg ctcgtagtcc ctctgccacc
     4141 atgccgatgt tcatcctgaa taccaatgtt tcccacgcct gcgtgccaga ggagtttctc
     4201 ttcgagatca cccagcatct ggtgcaggcc accggcaagc cagcacagta catcactgtg
     4261 tgcatggtcc cggaccagct cttgaatttc atgggcttga gtgacctctg tgccctctgc
     4321 accctgcaca gcatcggcaa gattcttggc gccagaacct cacctacagc aagctgctgt
     4381 gcttgcagcc tgctgtcgga tcacctgcac atcagcccag gccggatcta catcaactat
     4441 aacaacatga acacagctaa ctcgggctag aacggatcta ccttcgcttg agttctgacc
     4501 tgcaccgctg ttctcagagc cttgccgtac atggtgttca gtgttcagtg ttcatccacc
     4561 aatagtgatg cccaccttct ggtcgggaaa aataaatagt ttaagaaaaa gaagtatgat
     4621 tcattggcct ggtacacata gttatagtga ccagtaaggt tcttttaaat caccagaatc
     4681 cagcatggaa aaacatccca tgtctaaaac attgtgaaat cttcgatcag gagggagaag
     4741 ggtttctcaa tgttccttca tttcatgtct ttctaagcca gtggtcctca cagatcagcg
     4801 tgcttgagaa acaccactca gtggctttca gtcactgagc ttcagtggtc aacactggca
     4861 acttagttct gcaggcgagg gtgaggacct tgagtgtgcg cttctaacaa gggttgagtt
     4921 agcaggctct gccatggaca gaaccacgct tggagaactt cccatcagga gaataaggga
     4981 gcactacttc aaaggtcaca gaaatagagt cattcgggtg tttttctttt gttgtagatt
     5041 tctacttggc ttctcttccc acagacggca tggaaggtgg ctattttgct gtgatatcga
     5101 tgccgtgttg taaatcacca ggacaggcat ttaccatggg agaaacaaac acgcccactg
     5161 ctggctggaa actcctcacc ctgtcacccc actgccattc aactacaaaa actagcaaac
     5221 tctttctggg tcccttcaac ttaaggaaca ttgttcccat gccatctgaa gggcacaggc
     5281 ccctctggtc atctcaagat gtttaggcca acagctagca cacagcatca cagacagatt
     5341 ctctgctctt agagtttatt gtgtggcctg gaggaaaagc agtcctctct cttgccttca
     5401 ttttctgcca tgaaatatgg aaatattatt gtctggttca ttggataatc tctcaaaggt
     5461 cagtgctgtc tgcatgtttt ttactgagtc cctcctattt aggaacaagt ttagagatcc
     5521 accaaacttt ggtgttttac tcgctcagct cctagaaaac caggtttgag atgttagcaa
     5581 gcaaaagcac tctaacagtc tctgaagccc tttggcagtt gctcacctct ggccatgtgg
     5641 ctctgaggct gtcaggggca caatgcccct ggtctataac cctgagagtt agcattgaca
     5701 gctttcaata ccctgtagct aatatccccg aggctgatcc aagcctcctc agaacacccc
     5761 cactctgtgc ctgattgcca gtacctcaga ggaaataatg ctatcttaac tactccatag
     5821 aaagtgaggg tggccaattc actgtcttcc ccagtagtca gctgccatct ctttccttgg
     5881 cggagaaatt gacctagaga tggagatgag atagaaacgg gtcagaaagt tgtcttttta
     5941 agaaattctt gcaagttcgg ggaaagggaa ataggacttc cttggttagg taagggaatc
     6001 acttcagcag cccggcctca ccagctgctt atcggcctgt gtggatattg atatttttat
     6061 tggatatttt ctttatttac atttacagaa acccactatc ccatctaccc ccctgcttct
     6121 atgagggtgc tccctcaccc acccaacc
//
