LOCUS       XM_039106696            1414 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus elongation factor 1-alpha 1 pseudogene
            (LOC103691939), mRNA.
ACCESSION   XM_039106696
VERSION     XM_039106696.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039106696.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1414
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1414
                     /gene="LOC103691939"
                     /note="elongation factor 1-alpha 1 pseudogene; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 291 ESTs, 23 long SRA reads, 128 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:103691939"
                     /db_xref="RGD:9202998"
     CDS             49..1134
                     /gene="LOC103691939"
                     /codon_start=1
                     /product="elongation factor 1-alpha 1-like"
                     /protein_id="XP_038962624.1"
                     /db_xref="GeneID:103691939"
                     /db_xref="RGD:9202998"
                     /translation="MITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAYTLGV
                     KQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKKIGYNPDTVAFVPISGWNGDNMLE
                     PSANMPWFKGWKVTRKDGSASGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGT
                     VPVGRVETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKD
                     VRRDNVAGDSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKE
                     KIDRRSGKKLEAGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQTVAV
                     GVIKAVDKKAAGAGKVTKSAQKAQKAK"
ORIGIN      
        1 tgtattgaaa atgcagggac tacaggacac agagacttca tcaagaacat gattacgggc
       61 acatctcagg ctgactgcgc tgtcctgatt gttgctgctg gtgttgggga atttgaagct
      121 ggtatctcca agaacgggca gacccgtgag catgctcttc tggcttacac tttgggtgtg
      181 aaacagctaa ttgttggtgt caacaaaatg gattccaccg agccaccata cagtcagaag
      241 agatacgagg aaatcgttaa ggaagtcagc acctacatta agaaaattgg ctacaaccct
      301 gacacagtag catttgtgcc aatttctggt tggaatggtg acaacatgct ggagccaagt
      361 gctaatatgc cgtggttcaa gggatggaaa gtcacccgca aagatggcag tgccagtggc
      421 accacgctgc tggaagcttt ggactgcatt ctgccgccaa ctcgtccaac tgacaagcct
      481 ctgcgactgc ccctccagga tgtctataaa attggcggca ttggcactgt ccctgtgggc
      541 cgagtggaaa ctggtgttct caaacctggt atggtggtta cctttgctcc agtcaatgta
      601 acaactgaag tcaagtctgt ggaaatgcac catgaagctt tgagtgaagc tctgcctggg
      661 gacaatgtag gcttcaacgt aaagaacgtg tctgtcaaag acgttagacg tgacaatgtt
      721 gctggggaca gcaaaaatga cccaccaatg gaagcagctg gcttcactgc tcaggtgatt
      781 atcctgaacc atccaggcca gatcagtgct ggctatgccc ctgttctgga ctgccacacg
      841 gcccacatag catgcaagtt tgccgagctt aaagagaaga tcgatcgtcg ttctggtaag
      901 aagctggaag ctggccccaa attcttgaag tctggtgatg ctgccattgt tgacatggtc
      961 cctggcaagc ccatgtgtgt tgaaagcttc tctgactacc ctccacttgg tcgttttgct
     1021 gttcgtgaca tgaggcagac agttgctgtg ggtgtcatca aagccgtgga caagaaggct
     1081 gcaggagctg gcaaagtcac caagtctgcc cagaaagctc agaaggctaa atgaatatta
     1141 tccctaacac ctgccacccc agtcttaatc agtggtggaa gaacggtctc agaactgttt
     1201 gtctcaattg gccatttaag tttaatagta aaagactggt taatgataac aatgcatcgt
     1261 aaaaccttca gaaggaaaga atgttttgtg gaccattttt ttttgtgtgt ggcagtttta
     1321 agttattagt tttcaaaatc agtacttttt aatggaaaca acttgaccaa aaatctgtca
     1381 cagaattttg agaccattaa aacaagttta atga
//
