LOCUS       XM_039103302             608 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus 60S ribosomal protein L9 pseudogene
            (LOC103691519), mRNA.
ACCESSION   XM_039103302
VERSION     XM_039103302.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051337.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039103302.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..608
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..608
                     /gene="LOC103691519"
                     /note="60S ribosomal protein L9 pseudogene; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 16 Proteins, and 93% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:103691519"
                     /db_xref="RGD:9452260"
     CDS             1..579
                     /gene="LOC103691519"
                     /codon_start=1
                     /product="60S ribosomal protein L9-like"
                     /protein_id="XP_038959230.1"
                     /db_xref="GeneID:103691519"
                     /db_xref="RGD:9452260"
                     /translation="METILSHQTGDIPENVDITLKGRTIILKGPRGTLRRDFNHINVE
                     LSLLGKKKKRLRVDKWWGNRKELATLRTICSHLQNLIKGVTLGFRYKKRSVHAHVPVN
                     VIIQENGSLVEIRNFLGEKYIRRVRMRTGVACSVSQAQKNELILEGNDIELISNSAAL
                     IQQATTVKNKDIRKSLDGIYVSEKGTVQQPDK"
ORIGIN      
        1 atggaaacca ttctcagcca tcagactggc gacattccag aaaatgtgga catcactctg
       61 aaggggcgca caatcattct gaagggcccc aggggaactc tgaggaggga cttcaatcac
      121 atcaatgtag agctgagtct tcttggaaag aaaaagaaaa ggctccgtgt tgacaagtgg
      181 tggggtaaca ggaaggaact ggccaccctc agaaccatct gcagtcatct tcagaacctg
      241 atcaagggtg tgacactggg cttccgttac aagaagaggt ctgtgcatgc tcatgtccct
      301 gtcaacgtca ttattcagga gaatggatct ttggttgaaa tccgaaattt cttgggtgaa
      361 aaatacatcc ggagggttcg gatgaggaca ggtgttgctt gttctgtttc tcaagcccag
      421 aagaatgagt taatccttga aggaaatgat attgaactta tttcaaattc agctgctctg
      481 attcaacaag ccacaacggt taagaacaag gatatccgga agtctttgga tggcatctat
      541 gtttctgaga agggaaccgt gcagcagcct gacaaatgag acctcacttt cctagctcca
      601 gaaacaag
//
