LOCUS       XM_039089868            1424 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus transcription elongation factor B
            polypeptide 1 pseudogene (LOC103691088), mRNA.
ACCESSION   XM_039089868
VERSION     XM_039089868.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051347.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039089868.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1424
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1424
                     /gene="LOC103691088"
                     /note="transcription elongation factor B polypeptide 1
                     pseudogene; Derived by automated computational analysis
                     using gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 20 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:103691088"
                     /db_xref="RGD:9368177"
     CDS             1055..1393
                     /gene="LOC103691088"
                     /codon_start=1
                     /product="elongin-C-like"
                     /protein_id="XP_038945796.1"
                     /db_xref="GeneID:103691088"
                     /db_xref="RGD:9368177"
                     /translation="MDGEEKTYGGYEGPDAMYVKLISSDGHEFIVKREHALTSGTIKA
                     MLSGPGQFAENETNEVNFREIPSHALSKVCMYFTYRVRYTNSSTEIPEFPIAPEIALE
                     LLMAENFLDC"
ORIGIN      
        1 gtgttggaac cctccatatt ggagttatgg atagttgtga gctgccatgc gggtgctgag
       61 agttgggcct gtgttggttt tgttcacttc ttagctattt tattggattt ttatctcgac
      121 ctcccttcca acctttattc cacattaatc ccttccaacc ccccaacact aggtaggaga
      181 gaaactaggg gttagagggg aaaggggcat agatctttca gtcaataaaa caactacttc
      241 ctgctgatta gggatgttgg gtttcttggg gcaagtccat ccttcatcag agtagctcca
      301 acttcctttt gcttgggaac acttgacaaa ccgcactaac agcaactagg atcagcagcc
      361 tccacaggcc ttctcagggc tctcccattt atacctttct ccagagttaa actatctgca
      421 gctgacaaat atcacgcccc tgctagtgca caaggcaaat cataagcacc tgctgtgaag
      481 caccctcttc tcccacaccg gggattaaaa caaaaacatt cacttagcat aactgggttt
      541 ttaaagaaac caaaattctc actatagacc tgtgtcctct ggaagaacag ccaataccag
      601 ttgagccatc tctgaccatt gtcttattct tttaataagc cagtaagcaa agcattctct
      661 tgagggctgt gagccattct aagaaagaga aaaaggttat cgaaatcact gattaacagc
      721 taaacaggga gccaaaaatg caggtggaaa ctggagactc ctgcctggca tttggagtga
      781 ggacagtttt gtgagactga gtcccttgcc tgtgggggtc tacgctatat tcaagcagtg
      841 tcagaattga cgtgacttgc aggttgtcat aggtgtccag agaaccatga aaccaccagt
      901 caaccaccaa actgacatct ggcgtcagaa gtgtcctaag tagaaagccc ctctttgact
      961 tccttcggat gcaagttact agcagactgc ttctcggcct tgccaggaaa ctagtaagtt
     1021 cctctgggat caaatagaat tttataagaa cataatggat ggagaggaga aaacctatgg
     1081 tggctatgaa ggccctgatg ccatgtatgt gaaattaata tcttctgatg gtcatgaatt
     1141 tattgtaaaa agagaacatg cattaacatc aggaacaata aaggccatgt tgagtggtcc
     1201 aggtcagttt gcggagaatg aaaccaatga ggtcaatttt agagagatcc cttcacatgc
     1261 gctatcgaaa gtgtgcatgt attttaccta cagggtccgc tatactaaca gctccactga
     1321 aattcctgaa ttcccaattg cacctgaaat tgcactggaa ctgctgatgg ccgagaactt
     1381 cctagattgt taaataaaat aaattataat aaactgttaa aaaa
//
