LOCUS       XM_039100594             200 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus 60S ribosomal protein L39 pseudogene
            (LOC103690889), mRNA.
ACCESSION   XM_039100594
VERSION     XM_039100594.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051356.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039100594.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..200
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..200
                     /gene="LOC103690889"
                     /note="60S ribosomal protein L39 pseudogene; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 10 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments"
                     /db_xref="GeneID:103690889"
                     /db_xref="RGD:9146728"
     CDS             28..183
                     /gene="LOC103690889"
                     /codon_start=1
                     /product="60S ribosomal protein L39-like"
                     /protein_id="XP_038956522.1"
                     /db_xref="GeneID:103690889"
                     /db_xref="RGD:9146728"
                     /translation="MSSHMTFRIKLFLAKKQKQNRPIPQWIQMKTGNKIRFNSKRRHW
                     RSTKLGL"
ORIGIN      
        1 gctctgtgcc tgattcagat ccttgccatg tcttctcaca tgactttcag aatcaagcta
       61 ttcctggcaa agaaacaaaa gcaaaatcgt cctattcctc aatggattca gatgaaaact
      121 ggtaacaaaa tcaggttcaa ctctaagaga agacactgga ggagtacgaa gctgggtctg
      181 taaggagtca cacaatggca
//
