LOCUS       XM_039099291            4212 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus 60S ribosomal protein L13 pseudogene
            (LOC103690331), mRNA.
ACCESSION   XM_039099291
VERSION     XM_039099291.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051355.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039099291.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4212
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4212
                     /gene="LOC103690331"
                     /note="60S ribosomal protein L13 pseudogene; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 EST, 16 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments"
                     /db_xref="GeneID:103690331"
                     /db_xref="RGD:9200139"
     CDS             970..1551
                     /gene="LOC103690331"
                     /codon_start=1
                     /product="60S ribosomal protein L13-like"
                     /protein_id="XP_038955219.1"
                     /db_xref="GeneID:103690331"
                     /db_xref="RGD:9200139"
                     /translation="MAPSRNGMILKPHFHKDRQQRVDTWFYRPGCEIHRCKTGQAKVH
                     RIAPRPMPGPIRPIVRCPTVRYHTKVPGRGFSLEELRVAGVNKNMARTICICVDPRRQ
                     NTSTKSLQAKVQHLKEGYRSKLIRFPRKPSAPKKGDRSAEEFKLAIQLTGPVMPIRNV
                     YKKVKGRSHHRRRTFKAFASLRMARANARLFGI"
ORIGIN      
        1 tttagtgggt ttcttgttag aaaaagaaaa aataaaaaca aaaaaccaaa acaaaacaac
       61 aacaaaaaac agaaacagaa acaaaggaac agaaccagtt aaacaatgag aaaaacttaa
      121 gtgtttaaag atgggtctcg gggctgggga tttagctcag tggtagagcg cttacctagg
      181 aagcgcaagg ccctgggttc ggtccccagc tccgaaaaaa agaaccaaaa taaataaata
      241 aataaataaa taaataaata aataaataaa taaataaata aataaataaa gatgggtctc
      301 agcaaaaatt ccagcaaggt tgggcgtgga gaccgacaga gcatttgatt ggttatcttt
      361 aagggcattc agaggttccc ttaaactgca ggtacataaa cgcatgccaa gccaagacgt
      421 ctttcccttt ctcttttttc ttaaaggctg aaagaaattt ttatgacaga gacactttac
      481 cttaagccca gtccaaaaac acaaaacaaa acaaccacgc ccccccccca aaaaaaaaaa
      541 aaaaaaacca aaaaatctgc tcaggaaaac gaaaaccgaa agataaagaa gtaaggtcaa
      601 acaagagtgc ctactttaga ctttgccttt agtcgataaa ctctaaaatt agtttagttt
      661 agcatccagt tcaacccaca tgtaattttt tgaagagctt tttactatgc gttaccaatt
      721 ttctcagttt gtctttgttg ttcacagatg tcttacattt taattaaagc aaactaacgg
      781 gcgatgaata aaaaaaaaaa gctccattgc ctggggtttg attaagcatg caagatgaac
      841 aggtttagaa atagccacat ctagatctcc ctggattttc cccccaaaac atttgcaagg
      901 tcatgattat cccacataga gacagttaag gcctttccgc tcggccgttc tcctgaacag
      961 gaggcaacca tggcgcccag ccggaatggc atgatcctca agccccactt ccacaaggat
     1021 cggcagcaga gagtggacac ttggttctac cggccaggat gcgagatcca cagatgcaag
     1081 accgggcagg cgaaagtgca ccgcatcgcc cctcgcccca tgcctggtcc catcagaccc
     1141 atcgtgaggt gccctacagt taggtaccac accaaggttc cgggcagggg cttcagcctg
     1201 gaggaactca gggtggctgg tgtcaacaag aacatggctc gcaccatctg catctgtgtg
     1261 gacccaagga ggcaaaacac gtccactaag tcactgcagg ccaaggtgca gcacctgaag
     1321 gagggctacc gctctaagct catacgtttc cccaggaagc cttctgctcc gaagaaggga
     1381 gacagatctg ctgaagaatt taaattggcc atccagctaa caggacctgt gatgcccatc
     1441 cggaatgtgt acaaaaaggt aaaaggccgg agtcatcaca ggagaagaac ttttaaggct
     1501 tttgccagtc ttcgcatggc ccgtgccaac gcccggctct ttggcatctg agcaaaaagg
     1561 acaaaggaag ttgcagagca agatggagaa aagaaaaggt aatgtgcggt tgagctgcaa
     1621 taattttttt ccttaaagaa aaaaataaaa gacagcgaag tacacgtagt agcttaccgc
     1681 taaatatttc ctcctttaag aaactgtgtg tgttgttgtt gtctctgtgc tagctaggga
     1741 atgtgtgttt tggggacagt tttttttttt tttttttttt tttggttctt ttttttggag
     1801 ctggggaccg aacccagggc cttgagcttc ctaggcaagc gctctaccac tgagctaaat
     1861 ccccaaccct tggggtcagt tttatatgct attttgggga ctttctcagc tttcccccta
     1921 agaaagctgc ccttactggg tctctagtta tcctcacacg tttacgaaaa cacgaggggt
     1981 ctcgagacac tgcatgaacc gatccctcag atgtgtctct tcccaagaga gccaatcagt
     2041 tccttctgag ctaggaatgg agcgtgtttg ttgggtttcc gcatgaagct gttgcagatt
     2101 gcagggtgct cccctgacaa ctctaccccg ggggagaaaa aacaagtgct tcttgtcagc
     2161 gtctttagca ctgactgccc atgacattct agatctagac caaaatgctt tcaaagcaaa
     2221 caaaaatcca atacttttaa tcacattggg taagaatagc acactaccac agattttgag
     2281 ccaaagttca agcaaacttt aacattggtg aggaccatgg atattggcca ggtccgtacc
     2341 caagattccc agagttctgc tgccaaatta tattcattgg ggacttataa agaaagtacc
     2401 tacctaactc ctgcatagat tgccaaatct tgtaagttta gactccattt tagagaccat
     2461 gaactcaggt aaactaacag gctggtacct agcattagtt tccaagttgc cccccaacaa
     2521 aacctgagcc taggtctggt ttctaggcta accccaacag acctgcatct gcaagttaat
     2581 ttcccccaac aatccagcat ttccaggtta attcccaaca accccacctc ttgcctgacg
     2641 accaccaagg cagggggaaa cagaagttaa gtttatggtg tgacttccag caccggccaa
     2701 gtatatgaaa ggccagagta gctctccaat tagatgcttg ccatgctaga aacgctagta
     2761 tttactgtag ttacagcaag cttggggaat ttctatatgg gacatcaagt tgatatttta
     2821 aaaactgcgt ttctggctta agctgcagta tccaaacaca ggagcaaaac cacctgacaa
     2881 acaggatggc tcggcggtct cttttcttca ggatgtctta ggtttatata taccttgacc
     2941 gaccctgctg ttgtagccag tctgggtatt gccagacggg agaggtggtt gctgagattt
     3001 gaactcagga cctctggaag agcagtcagt gctcttaacc actgagccat ctctccagcc
     3061 cattgagata tctttatacc aaaagaatat tgtctcatag gttgacaact gctacaacga
     3121 agtctcattt ggttggaatc cttgacactc acccacaaga gtcatcgact agactccaat
     3181 agaggggagc accttttcct tccctttgct ccataactca acctttattt tcattttcac
     3241 tttcgtgtat gtgtctttat gaatatgtgg tggtttgaat aaggatggcc attggctcat
     3301 acatttgaat gcttagtccc caaggagtgg ccctatttga gaaggattag aaagattagg
     3361 agctacagcc ctgttggagt gggcgtggcc tcgtttggat gggtgtggcc atgttagagt
     3421 gggtgtggcc ttgtggagtg ggcgtggcct cgttggaaga agcaagtcac tagcagtggg
     3481 ctttgaggtt ttaaaagccc ataccaggct tgtgctcgct agcactcact ctctctctct
     3541 ctctctctct ctctctctct ctctctctct ctgtttgcat acctgtctgc caccgtgttt
     3601 cctaccatga tgacaatgga ccatacctct gaaactgaag aaagtctgcg attaaatgct
     3661 tctctttctg atgactctgt cctgtgtcaa attgacacaa acccagccag taccacttcc
     3721 ctttcttgat agaggatagc cttgaagggt aagctagaat aaatctttta tcctgtaaac
     3781 tgctcaccag actattctat cacagcactg agaaaaataa ccaagaccag tataagtgta
     3841 tatgcctgta gttctgtgat aacaaggcta ctcttagtta ctgtgagact atggagggac
     3901 atcaagtccg acatacggca tccctctcat aatattcagt ttagcaggtc tcctacactt
     3961 aaaaattatc cactggaggg atggctcaac agtgaggagc actggctgct ctacctgaag
     4021 tcttgagttc aattcccagc aaccacaagg gggctcgcaa ccatctgtga tgggaatctg
     4081 atgccctctt ctggcaggca ggggtacaag cagatagagt atatatgata tacgataaat
     4141 aaaatataca tggagggacc catggctcca gacacatgtg tagcagagga tgaccttatc
     4201 tgacatcaat ga
//
