LOCUS       XM_039098387            2132 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus uncharacterized LOC103690290
            (LOC103690290), transcript variant X2, mRNA.
ACCESSION   XM_039098387
VERSION     XM_039098387.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039098387.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2132
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2132
                     /gene="LOC103690290"
                     /note="uncharacterized LOC103690290; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1 EST,
                     and 100% coverage of the annotated genomic feature by
                     RNAseq alignments, including 18 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:103690290"
                     /db_xref="RGD:9451621"
     CDS             182..934
                     /gene="LOC103690290"
                     /codon_start=1
                     /product="histocompatibility antigen 60b-like"
                     /protein_id="XP_038954315.1"
                     /db_xref="GeneID:103690290"
                     /db_xref="RGD:9451621"
                     /translation="MAMRATTKCNLSLNLGLFLLLNFLGTAMLEGTDSLSCTFTVKYR
                     SSPGQCSVNGKPLLRFDDVRQNSPVGKPEKKGNATKVCADLNQSLKDIFQKMMNLESG
                     LFDLSKGNHTLQVTVQSQYNQGIFMDGCWVFTIDRQYPFYFYPKIMTWRESHPDASRT
                     VSQWQNNREIAQSLRTCSMGDFSQCLRKLLTDSREVPRSTITTLDTTKPSSATQILPT
                     VDSASSVFTTWSQYIFVLILCLAILIINALIR"
ORIGIN      
        1 cgccgccacc acctccgccc cggcctcagg aagcaggttt tgcccgccac ctcctgcagc
       61 cgcggcggac cgcctcgggg gactggttat tttgtttctt taccctgttc ccaaggaacc
      121 ctgagggcgc aactgcagca gctctgggcg caccttaagc agcctggact caaaaaggac
      181 catggcaatg agagccacca ccaagtgcaa tctttctctg aatctgggcc ttttcttgct
      241 gctgaatttt ctggggaccg cgatgctaga aggtacagac tctctaagtt gtaccttcac
      301 tgttaagtac agatcctcac ctggacagtg ctcagtgaat ggaaagcctc tccttcgttt
      361 tgatgacgta aggcagaact cacctgtggg taaacctgaa aagaagggaa atgccactaa
      421 ggtgtgtgct gatttgaacc aaagcctgaa agacattttt cagaagatga tgaacctgga
      481 gtcagggcta tttgatctgt ccaagggtaa tcacaccttg caggtcactg tacaatctca
      541 atataatcaa ggaatattca tggatggatg ctgggtcttc acgattgata gacagtatcc
      601 cttctacttt tatccaaaaa tcatgacctg gagagagagt catcctgatg ccagcaggac
      661 cgtgagtcaa tggcagaaca acagggaaat agcccagagt ctcaggacgt gctccatggg
      721 ggatttcagc cagtgcctca ggaaattgtt gacagactcc agagaagtgc caagatcaac
      781 aataacgacc ttggatacca ccaagccttc ctctgccacc cagattctac ccacagtgga
      841 cagtgcctca tctgtgttta ccacctggag tcaatatata tttgtattga ttctgtgttt
      901 agcaatatta atcatcaatg cattgatccg ttaggtgcct ttgtggttgc tacgatggta
      961 aagaaaaaag taaggaaggg gctgggctca ctcttcttct tggtatatta atcaggtaag
     1021 gacacaggag aggggtccca atggtctaat gcaagccact ctctatctga gtactagaat
     1081 gaagtctcag tttagtcttc aacctcctct ccagagtaat gttggagatg atgattgttg
     1141 ggcacaggag gaaggcagag tcagcataac tctacagtca gcagaggatg aaccaggaat
     1201 gtcctcgtga gggaacagag aatccatagt ccaaggttcc aaatgagata caaggaaacc
     1261 ctaaatgagg tgctccctcc tcataacaaa caaaagttac cattagactg tgattaaaat
     1321 tctatttttt ttctggggac gacatgatcc agtgcagtaa ttcttatgcc cagggccatg
     1381 tgtgtacatc aatagctcct gacttaggcc agcccttaag acagaaggat cagaatgagt
     1441 agagcattca agaagtcggc tgacctgtaa tctgagcatt caggtggctc agtgagaacg
     1501 accaccaaat tcagggccag cctgggctgc ataattgaat cttctccaaa gaatgaagaa
     1561 aactgcaaag tccactcatt taacttggtc cctctaccta ggcacagttc catgcatgtg
     1621 aaactatgac tccaatgtgt ctgtcctctg aggttgaagc cgagtttagt cagggaatgt
     1681 gggctgagtg ctcaccactg acattcttgg ctttttccaa atacataaga aagtaaacat
     1741 aaaatttgtg tagaaaatgt caatgttctt agcattttaa tgtgttctaa aaaatttttt
     1801 ccatataatc ataggttggt attttaatgt caggtgacat ttcacatatt taaatcaaca
     1861 taattatttt taatgactta tattgcataa aaagtttgaa atctatctgc agacctacat
     1921 ttcctctgtg tgggaagctg aggcaggagg attgtcacaa gtattcaaac ttgttgtcaa
     1981 ttacattcta agcttggggc ccaccggagt gataaaaaga agccttgact cctaagaatt
     2041 agaaagaaag gaagaaagaa agaaaggaag gaaggaagga aggaaggaag gaagaaagaa
     2101 agaaagaaag aaagaaagaa agaaagaaag aa
//
