LOCUS       XM_039097077            2308 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus uncharacterized LOC102557368
            (LOC102557368), mRNA.
ACCESSION   XM_039097077
VERSION     XM_039097077.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; corrected model; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039097077.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio   :: 5% of CDS bases
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-237               JACYVU010000023.1  5912398-5912634
            238-1318            JACYVU010000023.1  5917562-5918642
            1319-1319           "N"                1-1
            1320-2308           JACYVU010000023.1  5918643-5919631
FEATURES             Location/Qualifiers
     source          1..2308
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2308
                     /gene="LOC102557368"
                     /note="uncharacterized LOC102557368; The sequence of the
                     model RefSeq transcript was modified relative to its
                     source genomic sequence to represent the inferred CDS:
                     inserted 1 base in 1 codon; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 2
                     Proteins, and 94% coverage of the annotated genomic
                     feature by RNAseq alignments, including 34 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:102557368"
                     /db_xref="RGD:7507922"
     CDS             239..2308
                     /gene="LOC102557368"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: endogenous retrovirus group
                     K member 21 Env polyprotein-like"
                     /protein_id="XP_038953005.1"
                     /db_xref="GeneID:102557368"
                     /db_xref="RGD:7507922"
                     /translation="MPNHQFGSQTDSSGQPKETDIRPPRQKRPNRRIMRNLAKKIKAT
                     RLEPKIKPRQTPTWTQLKTLTAQAKEVLKAAHAPETATLLFVAMLAVMSAPTALGESC
                     WAYLPKPPILHPVGWEVSDHIKVLTNQTLVIGGSPDFHLLKNSSGYVDFEGKSDSLPI
                     CFSFSPSVPVGCFQVGKRVFNTDTPTLDNTKLDGKGNGRRMWELWMTTVSDKEEKRQH
                     YTTAKNLPPRYPHYRTTFKKDALWEGDENAFPRWLPCAFPDNGVRFSPLGAAGLLWDF
                     SMSSPDKDQNNYLSTNSKLYGNYVPPVGKPIKRWYDAGWVEPTWFWEPLHTDLPDRQN
                     KPLIEHPELFRLVASSEKLLLKKPGAXDYDAVSVSACVTYPYTILVGLPQLINIDKVE
                     SIFSIKCTSYKLTNYIDSTVSGSVILIVRRPPYVLLPVDLGDEPWFDDSAIQTIRYAT
                     GLIRAKRFVAALILGITALIAIVTSFAVSTTALVKEMQTATFVNDLHKNVTLTLSEQK
                     IIDLKLETRLNALEEVVLELGRDVTNIKTRMATRCHANYDFICVTPLPYNATEEWERT
                     KTHLLGIWDDDNISYNIQELTSLITEMSKQHVDAVDLSGLTRSFADGVKSLNPIDWTQ
                     YFIFIGVGILLLVVVLMIFPIVFRCFTDSIAQVQTDLNLVLLKNKKGGTAVPTAEITE
                     LRDKHDA"
ORIGIN      
        1 cgccatcccg tctccgctcc acgcgtgtcc tcaacagggg tccccccgca gatccttgga
       61 acctccaaga ttgccgaccg cggcagctgg cgcccgaaca gggacgcccg gacacgtgca
      121 tgctgttgtc ttgtgttttt cctgtttgtc ttttatcctc ttgctttaga attgcaatca
      181 ctacaggagc ggaacggact caccgaaggg aactgcagtc ccgcctacag agaagagaat
      241 gccgaatcac caatttgggt cccagacaga ctcatcaggc cagccaaagg aaacggacat
      301 ccgtccccca cgccaaaaga ggccgaaccg ccggataatg cggaacctgg ccaaaaagat
      361 caaggcgact cgcctagagc caaaaataaa accacgccag acgccgacgt ggacgcaact
      421 taaaaccctg acagctcagg caaaggaagt attgaaggct gcacatgccc cggaaacggc
      481 aaccttgctg tttgtggcta tgcttgcagt catgagtgcg cccaccgctt taggggaaag
      541 ttgttgggct tacttaccaa agccacccat attacatcct gtagggtggg aggtgtcgga
      601 tcacatcaag gttttaacca atcaaacatt agtgataggg ggatcgcctg actttcacct
      661 tctaaagaac agctcgggtt atgtagattt tgagggaaag tctgattctc tgcccatttg
      721 cttctctttc tccccttcag tgccagtggg ctgttttcaa gtggggaaaa gggtgtttaa
      781 cacagatacc cccaccttgg ataataccaa actagatgga aagggcaatg ggcggcgtat
      841 gtgggaattg tggatgacca ccgtgagcga taaagaagaa aaaagacaac attataccac
      901 agcaaagaat cttccgccgc gctaccccca ttacagaaca acatttaaaa aggacgccct
      961 ttgggaggga gatgagaatg ctttcccgcg ctggcttcca tgtgccttcc ctgacaatgg
     1021 ggtaagattc tctcccttag gcgctgctgg acttctctgg gacttctcca tgtcctcacc
     1081 tgataaagat cagaacaatt atctctccac caactcaaaa ctttatggga actacgtgcc
     1141 tccagttgga aaaccgatca aaagatggta tgatgcgggg tgggtagaac caacatggtt
     1201 ctgggagcca ctccacacgg acctccctga tagacagaac aaaccactga tagaacatcc
     1261 agaactgttc cgactggttg cttctagtga gaaacttttg ctgaagaaac caggagctng
     1321 cgattatgat gctgtttcag tttctgcttg tgttacctat ccctatacaa tattagtagg
     1381 attgccacaa ttgattaaca tagataaggt tgaatctatt tttagtatta agtgtacatc
     1441 atacaagctg actaattaca ttgattccac tgtatcggga tctgttatat tgattgtcag
     1501 gagacctcct tatgttttgt taccagtaga cttgggagat gagccatggt ttgatgattc
     1561 tgccatccag actattaggt atgctacggg tttgattagg gcaaaaagat ttgtagcagc
     1621 cttaattcta ggtataaccg ctttgatagc tattgttact tcttttgctg tttctactac
     1681 tgctttggtt aaggaaatgc agactgccac ttttgttaat gatctccata agaatgttac
     1741 ccttacatta tcagaacaga agattataga tttgaaatta gaaactagat taaatgccct
     1801 agaagaggta gtattagaat taggacgaga tgttacaaac attaagacta ggatggccac
     1861 acgctgtcac gctaattatg attttatttg tgtgactcct ttaccttata atgctacaga
     1921 agaatgggaa aggaccaaaa cacatttgct aggcatatgg gatgatgata acatttctta
     1981 taatattcag gaattgacgt ccttaatcac agaaatgagt aagcaacatg tagatgcagt
     2041 ggacctctct ggattgacaa gatcctttgc ggatggagtt aaatcattaa atccaatcga
     2101 ttggacacaa tattttattt ttattggagt tgggatttta ctacttgttg ttgtactaat
     2161 gatcttccca attgtattcc gatgctttac agattccatt gcccaggttc aaacagatct
     2221 caatttggtg cttttaaaaa ataaaaaagg aggaactgcg gtgcctacag cagagataac
     2281 cgagctccgg gacaaacatg acgcctga
//
