LOCUS       XM_039103895            2007 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus MLV-related proviral Env
            polyprotein-like (LOC102557105), mRNA.
ACCESSION   XM_039103895
VERSION     XM_039103895.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051337.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 7% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2007
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2007
                     /gene="LOC102557105"
                     /note="MLV-related proviral Env polyprotein-like; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 13 Proteins, and 91% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:102557105"
                     /db_xref="RGD:7691404"
     CDS             1..1980
                     /gene="LOC102557105"
                     /codon_start=1
                     /product="MLV-related proviral Env polyprotein-like"
                     /protein_id="XP_038959823.1"
                     /db_xref="GeneID:102557105"
                     /db_xref="RGD:7691404"
                     /translation="MADPGQETDCGRHPCPQEWPTATRVLGDGRILPPLDSGFAEMAA
                     PFTWLLLVLLWPRVSGGISPHHIYNITWIVTNLMTGRLANATSVRGTLADAFPPLYFD
                     LCDVIDYKWEPGTTHNWHPSTTYYGCSPASYSKEIYVCPGHRVSRQCGGPGNGYCAQW
                     GCETTGDAYWKPSSSWDLITLKRDGRLPYTLCKRGSKCNPLVLHFTDSGRRATWDGPK
                     SWGLRLYVTGTDPVGLFSLNRQVSPLATRPIGPNLVLPDQKPPSLPAQAQPPSLPKVT
                     QAPGSTPTSPFSTTGGSTILISPSPGTGDRLFNLVAGAYLALNYSDPFRTQECWLCLV
                     SGPPYYEGVAVIGNYTNLTAAPDSCANTPSHRLTLPEVSGRGLCLGNVPHTHQTLCNT
                     TQKIPIGNYFLAAPKGTYWACNTGLTPCISATVLNQSSDYCVLVEIWPKVTYHESEYI
                     YSFFERQTRFRREPATLTLALLLGGITLGGVASGIGTGTTALIETGHFRQLQAAMNAD
                     LKAIEESVSALEKSLTSLSEVVLQNRRGLDMLFLREGGLCAALKEECCFYADHTGIVR
                     DNMAKLRERLAQRQKLFDSQQGWFEGWFNRSPWFATLLSTLMGPLIILLLILLFGPCI
                     LNRLVQFMRDRLSVIQTLVLTQQYHRLRQQETEIS"
ORIGIN      
        1 atggctgacc ccggccagga gaccgactgt ggccggcatc cctgccccca agaatggccg
       61 acagctacga gagttcttgg ggacggcagg attctgccac ctctggattc tgggtttgct
      121 gaaatggcag ccccttttac gtggctcctc ctagtccttt tgtggcctag agtcagtggg
      181 ggaataagcc cccaccacat ttataacatt acctggatag tcactaatct catgacagga
      241 aggctggcta atgctacctc cgtaaggggg acgctggccg atgccttccc ccccttatac
      301 tttgaccttt gtgatgtgat agactacaag tgggagcctg gcactaccca taattggcat
      361 ccctcaacca cctactatgg ttgcagtccg gcttcctaca gcaaagagat ctacgtttgc
      421 cctggacaca gagtgagccg gcagtgcgga gggccgggga atgggtactg tgcccagtgg
      481 ggatgtgaga ctactgggga tgcgtattgg aagccatcct catcttggga cctgataact
      541 ctgaaacgag acggtcggct tccttacacc ttgtgtaaac ggggctcgaa atgcaatccc
      601 ctcgtcctcc acttcaccga ctcaggtaga agagcgacct gggacgggcc caaatcttgg
      661 ggcctgcgct tatacgtcac agggaccgat ccggtgggtc tgttctctct aaatagacaa
      721 gtctctcccc tggccactcg acccattgga cccaacctag ttctaccaga tcagaagcct
      781 ccctcgctcc cggcacaagc ccaacccccg tcattgccta aggtcaccca ggcccctggt
      841 agtactccta caagcccctt ctccacaacg gggggctcca ccattttgat ctccccatcg
      901 ccaggcaccg gggatcgatt attcaatttg gtggctggtg catatctggc tctcaactat
      961 tcagaccctt ttaggactca ggagtgctgg ttgtgcctcg tttccggtcc gccctattat
     1021 gaaggggtgg cagtcattgg aaattatacc aacctgactg ctgccccaga cagttgtgcc
     1081 aataccccca gccacagact aactctgccc gaggtctcgg gacgagggct ctgcttgggg
     1141 aatgtacccc acacacacca gaccctctgc aacaccactc agaagattcc catcgggaac
     1201 tacttcctgg cagccccaaa aggcacatac tgggcctgca ataccggact aacaccctgt
     1261 atctcagcca cagtcctcaa ccaatcctct gactattgtg tattagtaga aatttggccc
     1321 aaagtcacct accatgaatc cgagtatata tactcgtttt ttgagagaca gactcgtttc
     1381 cgacgagagc ctgccaccct gactttagct ttactcctag gaggaatcac cttgggggga
     1441 gtggcctcgg gtatagggac cgggaccact gcactcattg aaactggcca tttccgtcag
     1501 ttacaagcag ccatgaatgc agatcttaaa gctatagaag agtctgtgag tgcattagaa
     1561 aagtccttaa catcgttgtc tgaagtggtc ctccaaaata gacgagggct agatatgttg
     1621 ttcctccgcg agggtggatt atgtgctgct ctaaaagaag agtgctgttt ctatgcagac
     1681 catactggaa tagtaagaga taatatggct aagcttcgag aacgcctggc ccaaagacaa
     1741 aaactgtttg attcccaaca gggatggttc gaggggtggt ttaaccgatc cccttggttt
     1801 gctaccctcc tgtctaccct gatgggaccc ctaattattc ttctcctaat tcttcttttt
     1861 ggaccctgca tccttaatag gctggtacag ttcatgaggg atagactttc agtcattcag
     1921 acccttgtac taacgcagca gtaccatagg ctgagacaac aagagacaga aatttcttga
     1981 ccaagtcgag tgaaagattt cactcaa
//
