LOCUS       XM_039101489           10203 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus rho GTPase-activating protein 20-like
            (LOC102556805), transcript variant X1, mRNA.
ACCESSION   XM_039101489
VERSION     XM_039101489.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10203
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..10203
                     /gene="LOC102556805"
                     /note="rho GTPase-activating protein 20-like; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 100% coverage of the annotated genomic feature by
                     RNAseq alignments, including 6 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:102556805"
                     /db_xref="RGD:7734973"
     CDS             9095..9763
                     /gene="LOC102556805"
                     /codon_start=1
                     /product="nidogen-2-like isoform X1"
                     /protein_id="XP_038957417.1"
                     /db_xref="GeneID:102556805"
                     /db_xref="RGD:7734973"
                     /translation="MSWDLTARRLAPPSPLSLLLVLVLLSGAGALRPEELFPYGESWR
                     DRLPREGDDESSAAVKLAVPLRFYGVQFSNLYVGTNGIISTQDLPRETEYVVDDFPTD
                     FLAIAPFLADIHSSHSSGRILYGGHLLGCAESGCLLPVHRLPADQVQLPPYPLLPGHL
                     GASGPLGGGQSWGCVVWRELDGFDLEDSLDDRNDLDGPKKPSTGEGGGWSDKDLEDIL
                     GDGE"
ORIGIN      
        1 tcatgaaatt aaaggtcata gtcttgctct tcaggtgtgt tatgataacc agaatttgtt
       61 gttgtagtag tactaggttc tgatgttgcc atattgcact accttctgtt gagtgtgtgc
      121 ttgtgtttgc ctttaaccat ctagttgtct gttttattag ctttcaggtt actcccagag
      181 aggagcaagc ctcagggatt gtttctgcca ggtggcacag gcttccaagg tgccaggcat
      241 agctgtggaa ttaggtgcag gattgcatgt aaaggtatgg accagaactt ggaactcaga
      301 aaagatgtgg tagatgtctt gtctgcttgg tttactgctc ctggcaagtg agggattgtg
      361 gtagatggtg gtggtgatga tgatgatggt ggtgatgatg atgatgatga tggttgctta
      421 gtccctaatg gttttctagt gagagagcaa gaaagggtgt agatttgcat gggtggaaag
      481 gagaagagga tctgggagga tttggagaag tggaaattct agttagaata tactttatga
      541 aaaatcattt ttaataaaaa acatttttct ccaaagtata tgatagtgaa ttatataaca
      601 tacaatacct caatatattg agtgttctat gtattctctc taaccaaaag gtaatgaaat
      661 ttaaaattaa catatgatag atgagtgcaa atttcaattt aataaagtga aaatataatt
      721 tatagtctag tttagaagct tcaaaaaaat tctcaaaaag ctttaaattg tgttaaatat
      781 tatcaagtta cttttttctc tgagtagaca agggaaataa aaatgacttg tagagagttt
      841 ctgctacctc accaattgct tcaagtctca tgtcctaccc caacttttgg cagagacacc
      901 cccagctctg acaatgccag ttgtcatact gatttcagag caaacaataa aatgtgaaag
      961 catgaattca cagtagaaaa ggactttggc gcgataacag cacagaggga cagagggaga
     1021 cagaatggca gggaaggaga cagagaggag aaccacctca taaaacacaa agagagaaag
     1081 atagaaaaaa cagacatatg aagatgcagg aatacaaaaa catatacatc aataaaaaac
     1141 atttgaccca tcatatttca gttaattttt ttcagtgttt tagaaagtag aagactacaa
     1201 actaagaagc ttataaacaa gaagcaacat ataatatgaa gaaataatag ctaccaaatt
     1261 tgacagggac caagtgatca tatatcaagt actaatagtt gtgtcagccc actcttgacc
     1321 actgttcttt gtctttttct gagccctgct cctcaccatt cagatctttc ctggcttcta
     1381 agaatgcatg cagagccttt ggcagctcct ttttcacatc ttattacagc agcttctatc
     1441 ttgacaaagg tcttttcata taccctatat ttaatttggt cttgctggat aagttactac
     1501 tttcacatat ttaaaaaaaa aaacttcccc ttttgtattc ctggttgcac aattcaaaga
     1561 aggaacaagc ctgtgattat ttcatgccta acacatctaa gcagtccttc tgatcccaga
     1621 ggttcattta tcatgctgaa agtggatgaa atttgtagcc accctacagt cactttgaga
     1681 agtcttaaca gccacagttc ttcctggagg ctatgattta tctgaagcat gtgactgaat
     1741 ttatcaatag gttatactat actttttctt tgatacttgg atataaacac agcaagacaa
     1801 atttaaaaac aactttccct tgagacttag tactctctga aaagtagctg cactttttat
     1861 tttctggctt ccaaaagaaa ctatacttca gagaaggttt tagctcagtg tcatggaatg
     1921 agtacttgtc tcatgcagag ctcctggaat gaataggatc ttttacagaa ttaacttttc
     1981 attatctttc tcctgagcta tgatttcact aataatctat taactctgta aggccttatt
     2041 ctcttaaaaa tgcaaggtga gcacattaaa tataatatag tctaggaaag tatatcatgc
     2101 ttagatatgg gacagagata gactaacatc ccgagaaatg cccatagccc tatgtttctt
     2161 agttgattcc agattaaatc aagttgacag tgaaaatgat cgataagaac actaaagcag
     2221 ttcatcagat tgattctttc ttcatggtaa atgtttaatt tagttgttca tttaacatta
     2281 tactcgtttg tccaaagagg agactctttg agcttttcac acctatggtt agttccaagc
     2341 catgtgatct cacttcaatg gccggcactt agatgggtct gcttacagta gcaaagcctt
     2401 tttcttctag aactaagcta ttctttagtc aaatctcaga aggtctttac aacaatttca
     2461 gaaactttag agaatggcag gtaactataa gagatacaga cctctgtaca tgattacaca
     2521 tatgtagaaa ataatgaaga atgtaataat gaaatgttca gactgaactg ttcctggggt
     2581 tttgcattat gtttttgaac tgcatcaaca gaaggtttat ttgaaaattg tttttattac
     2641 atttattcat ttaaatattg tgtttgtgtc tgtgagtatg tgtgtttgta tgtgcatgca
     2701 tgcacacaca tcaaagctag aagtatgtca gaattaagca ctttgttctc taacaccatc
     2761 cactgtgtca gtaaagctct gtctgttgca cccaggcctg aattagagac ttgtgtatgg
     2821 aatggtgttc ccagcttcct ttggggttct aaactcagat cattatgctt atgtatgaaa
     2881 aactttactc tttctccctt ctttttagct cgccttttaa aagtacatgc aggacatagt
     2941 aagttaaact gtcttattat tgcaacacag aaacaacttt gttgacttat cacctagaat
     3001 ttttcttttt ttaatacttt aatgaataaa tttggcctat caatgcattt taataacccc
     3061 catccccgac acacacacac aacacagact tcagttggct caaataaagg tgtcttactt
     3121 agttagggtt ttactgctgt caaaaggcac cataaccaag ccaactctta tagggacaac
     3181 atttaattgg ggttggctaa taggttcaga ggtccagtcc attgtcatca cagtgggaac
     3241 atgccagtgt ccaggaaggc atgaaccaag aaaagatgag agttccacat atcatctgta
     3301 ggctactaag aaaagactgg cttccagtca gaaggagaag atcttaaagc ccacatctgc
     3361 attgacttac atacttcaag gccatacctt caaataatgc cattcctttg gccatacata
     3421 ttcaaactac tatattatac tccgtggccc acttaggtct tttcaaacac ctgagtgtat
     3481 ggtgccataa attgccataa cataatgctt aaacatttag gccaacttca aaaatcccat
     3541 acactatgac agtctcaata atgttagaag tccaaagttc aaaaagtctt ctgagattta
     3601 tcttattact tacctctgat atccaaccca agactggaaa ccagctggcc atacaccaaa
     3661 tatctccatg tctaatgtca aagcagtctt cagatatcaa actccttttt catttttgtt
     3721 gactgtgaca aaattctttc tcctgggctg gtttctcttt ctattagcag cttttcttgg
     3781 aaggtatccc atgtccatag catctttaac attttgatag tataagtcaa cctcacagat
     3841 tcttgttcca atgtctggga tccaaacatg atcttctggt ctcttccaaa gggtttcgct
     3901 tacttcttca gttctgccct ctgtggcact ctatggtctc cttgactcaa ctcaggtact
     3961 attgctgtta tggatggcaa tctcatagta ctggcatatc caatactcag ggatcttctg
     4021 tttcaactat gcttcaccaa tagactctta taatgtctct ttatagtgcc aaacctcaac
     4081 atcttcccat gaccacttaa gtatttgtcc atgaactgta actgatactg caccttcaga
     4141 aatgactgtc cctggtctta cctactcttc atgacccctt catatattca aaaagtacta
     4201 cctaggtgat tcttacaagt taccaagtcc agctacagca taaggtacaa tcttcgctat
     4261 ctttggaaca caaatctttt gccctttcag aaaactactt ccagacttca cctcagtaat
     4321 gctggtgtct ttataatcac aattaacttc atagcaccgc taaccaccaa caattgttgc
     4381 aatagtccct tttgtacttt aattccatgg aaccatgtag ataaggatgc cttgttctgc
     4441 taattgttat ggctggaaca tgttcccacc cgctcaaatc cccacccctt atgctgttac
     4501 agctttctgt tttccaactt cctcactgtt tatgcatagt tgtcctagaa cttgttctgt
     4561 aaattaacct tgaacacaga tatattgatg gttctgtatc catggattaa aagtgtatac
     4621 tgccatgtct ggatctaatc ttagctgggt gggatctttc cctaaaatct cttaatctgt
     4681 tatcgcctag gacataggat acacctctat tctgcttcct ggtgctcctc taatatttga
     4741 accatatatt tcgtattttt cctttctcag tttgctcttt ttcattaaaa tgttcttcat
     4801 aaaagtaagc tctagtaacc acacaacaga atttatacct ggctattttg agatttgcct
     4861 atccaaagca attaatctaa atctttgcac cttaacttca ggcagactgt tcttacagtg
     4921 gccaaatgca gccagccaga ttcttcacca aaatgccaca aaaaccgtct ctgtaccaaa
     4981 tactgaaatt ctccaatgaa accattttgg ccaggtctgc acagttaaaa tcacttttga
     5041 caacaaagtc tttcacagtc cttctagcat aggccattaa gcttcattta aagcactcca
     5101 atactttcta aatccaaagt cccagaatcc acattcttct aagcaaaagc atgatcaggc
     5161 caatcacaac aatagcctag tcctttgtgt caacttctgt ctaaattagt gttttagggg
     5221 actggtaaga cgaatcagag gttatgagca ctggctactc ttccagagga ctagagttca
     5281 gttcccatca acaacatggt agctcacaaa catctgttat gggatctggt gtcctcttca
     5341 ggcaggcaga gtatatgcaa aagggcactg atacattaaa taaatcaaat tgaattaaat
     5401 cattaataaa aaaataaata ggggctgggg atttagctca gtggtagagc gcttacctag
     5461 gaagcgcaag gccctgggtt cgttccccag ctccgaaaaa gagaaccaaa aataaataaa
     5521 taaataaata aaataaataa ataaatgagt gttttagtgc tgttcatcag acaccattag
     5581 caagtcaact attataatga caacatttaa ttgggggtgg tttacaggtt cagaggttta
     5641 gtccacatca tcaagccatt cgtagacatg taggagggac tgagaattat acaactttat
     5701 ctgaaggcca ctaggagaat actggtttcc aggaaactgg gacacacata ctagagccca
     5761 tatccacagt gacataccta cttcaataag gccataactg gttttaatag tgcaactcac
     5821 tgcatcaaaa ctattcaaac cattacaatt tttactaacc cagatgggat gctgtacact
     5881 gttcaacaaa catgttgaaa cctaccttca tggtacctcc acccacagtt atttttccta
     5941 tgaaataaca agaaaaatga accatgccta gtgaagactt gttgctacct cactaccagc
     6001 ttcaattttc atgtccttcc ttagtgttgg caaagatacc ccatgccccc accatggttg
     6061 ttgtcatcct gctttcacaa catggtttaa tttattctct ctcctacctc tgcctatgct
     6121 acaagtcaag gctgatgagt agtagaaaca tagaggaaag aataaacaaa tctgtcaggc
     6181 agaaaaataa gacaatgaaa tttattatag gttttgatgg tccaatttgt tatagagaat
     6241 tcagatatat tagtgcctac agcatttaca attcagaggc tattgctaca caaatgacaa
     6301 gtgatgttcc tttaatttat tatttgtctt atttacatag tatataatcg ttatgataaa
     6361 tcatgaccat tttgttactg ctctaactga gagctccctc aacgttttag ttcccttgca
     6421 tgcagttttc tcaggtggct gttccaggtg gaatatttta acatgaaaaa aaaattcaac
     6481 agcctctata attatgttac atgatgctgg taagtcattg tacttgagca agttgttctg
     6541 tatggtgttc caaaaaatgt ctagtgtaaa gcaggacaca tagaacacaa actgtatgtc
     6601 tttgtcagat attcactgac ctaaaattga tagatcgata ataaaaaggt agatgacatt
     6661 taggtcatag actggcaaat tatatacaat ggtttaatag attgattgta gatgattgat
     6721 agttaatgca tacaatatgg atgctgacaa acaaacagat ggatagtgtg gtagtttgaa
     6781 tgaacactga gaagtgacac tattaggaat tatggctttt tggtggatgt gtagccttgt
     6841 tagcagaagt atgtcactgt gatggtaggc tttgtggtct cacatatgtg cacaagtctg
     6901 gcaagtgtga ttcaaccctt ctgctgacag ccttcagatc aagatgaaga acacttagct
     6961 ccttctctaa tatcatatct ggctgcatgc tgttccctgc cattagctta gtttccttag
     7021 cacagtgtcc tcctgatttg gttatctatt gatgtccagc aactcctctc aaatgaagtg
     7081 ccttaagaca acacatattt agtaattctc agggtcatta tgaattaaga atgtgttatg
     7141 ggttaaatga gggccttgct tcaagggtct atcacatggc tgcaaccaaa gtcaaccagc
     7201 gttgtggtgc tatctcaaga ctccacaagc tcatttatag gtctcttggc agagtttggt
     7261 tcttgctggc tggtgaccag aggatctctg gagttcttta ctatgtgttg ccctcctaat
     7321 gcagtctatg gcttcctcag aaccagtgaa gatatggtat tgactggcaa gccagaaagg
     7381 ccattgaagt gaattctgat cactatggcc ccattctgtt ggtcagaatt cacaagcaag
     7441 cctatccttc tcaggttggc aggggtgggt tgttggagag taggagtgca tgggaggatg
     7501 ggggtttata caagaaagag aacactagga aatcaagctg tggggattcc atcttggatt
     7561 ttggtttgcc tctaatttgt aggctagacc tccagtcaat gttagagcta ttgttatgct
     7621 gaatggaggg atgctgagct agaggcagaa tgtatggtgg gtggaagagt aaataaggtg
     7681 tctttggaca agtcaaatcg cctcctgcct ctgagacatc attttgtcct cagcaaaatg
     7741 taaatacttg gtcacaaggg gggcaaatga gaaaaaaaag tgcaagcttc agtttgtttt
     7801 ctgagggaga aaacatagct ctctccagct tgcagggaca aactgctctg ggccttttct
     7861 gttgtgttga ttcggagtct gtcagtctgg tatcttcaag gattttagta tttggcccct
     7921 tggggccaaa taataaagaa atatattaaa taatatataa ataattaaga attacatggc
     7981 tgggataaac acaacgagaa agctggtttg gggagtcctt taaagtatct ctaaggcttt
     8041 tttaaaaact acctttactt ctaaggagcc tgtggtgggt gggcatagct gagagaaaac
     8101 tggctgtatg tgggaaattt cacgttcctg ataataaaat ggtaataaaa tctcatctgg
     8161 ctccggaggc ttagagcaga ggggatgttt atggtggagg gggttcccca acacaggtgc
     8221 agctgctttc caggttgtga ggttttccag gcctacaggg caattggggt tatggactct
     8281 gtggcctcct gctagtgtag ttcctttact cccaggcttt gggagaaaac actgagttgt
     8341 cccgccctgg cgccaggcag cttcactcca ggctccaatt gaatggtgtc acacaaagtg
     8401 ggattcacag tctgggctgg agtggtttgc cccagggaag gtaaacagct ggggaggaca
     8461 tttcagaggg tggcagtgtc ctcccaaagg ttagccagtg attggggata gaacttggga
     8521 gtcagccttt cacaaagcca tgcttctcag caggaaatgt gggtggggcg gagcagtccc
     8581 gggatagaga cgaaggtcct ttgaatctat cagagggcct ggcctcttgc aagaggggta
     8641 tcctggacgc gaggccaggg cagggagcac actccagtgt gtaatctcat taacctccct
     8701 agctctgcca acctagcacg cacagtcgct tacagcctac agctgcccgc gtgcctagtg
     8761 tccctccagc ccatgaggtc acctcctgca gagccataac ccatactgga gagttgtggg
     8821 tggcccagga gtagttggga cagcccagac cagatccggc caatagtctc accttaccag
     8881 actacagcag tcttagaaaa cctaatgaga accagtttta gtggccgctg gcaaactttc
     8941 tcagacttgc tgattggtca gtggccgaga gctgtagcca atcagtgcgg tggttgggcc
     9001 cgcattgcgg gccgaaggtc cgtgtgggca tctggccggc actgtggcct gcagagactc
     9061 gaggtgtgga gggcagagcc agggaggagt gagcatgtct tgggacctga cagccaggcg
     9121 gctggcacca ccatcaccgc tatcgctgct cctggtgctg gtgctgctgt ccggagctgg
     9181 ggctctgcgt cctgaagagc tctttcctta cggggagtcg tggagagacc ggctgccgcg
     9241 ggagggcgat gatgaaagct ccgcggctgt gaagctagca gtacctctac gcttctacgg
     9301 tgtccagttc agcaacctct acgtgggcac caatggcatc atctccaccc aggacttacc
     9361 cagggagact gaatatgttg ttgatgattt tcctactgac tttctagcca tcgccccatt
     9421 cctggctgac atccactcga gtcacagcag tggccggatc ctgtatggag gacacctcct
     9481 gggctgtgct gagtctggct gcttgctacc tgtgcacagg cttcctgctg accaggtcca
     9541 gcttcccccc tacccacttc ttcctggcca cctgggagca agtgggcccc taggaggagg
     9601 acagtcttgg ggctgcgtgg tctggagaga acttgatggg tttgacttgg aagactcctt
     9661 ggatgatcgg aatgatctag atggccccaa aaagccaagt acaggagaag gaggaggttg
     9721 gtcagacaag gatcttgaag atatcttggg agacggggaa tagaaacctg acaagaataa
     9781 agtggatgga ctgccagacc gaaggcttca tgaaagaact gtgctgctgt gaacgtctgt
     9841 atatgggcgt atagaagatt tcacacaggc atagttttta actgtcttga gtacttgtgg
     9901 gcattggcat ccgctcagca tctgctaggg cctctgtgct gggtccagac atggctccgt
     9961 ttcacttgtg ggtgcccctt taatacccga acaatatatt atatattgtt tctttactaa
    10021 tctcactgca cttgcccaaa attctcctcc tgagacttaa ccagagaaca gagtctctgc
    10081 tgggcttttc tgagacttcc tttgtcggtg caatgaatct gagtcttcac cttagcctca
    10141 ggtagactct tcagacaggg gcaaaaagca gccacattct tcaccaaaac accacaaaaa
    10201 caa
//
