LOCUS       XM_039084929            7875 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus zinc finger protein 99-like
            (LOC102556463), transcript variant X1, mRNA.
ACCESSION   XM_039084929
VERSION     XM_039084929.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051344.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039084929.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7875
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..7875
                     /gene="LOC102556463"
                     /note="zinc finger protein 99-like; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1 long
                     SRA read, 11 Proteins, and 98% coverage of the annotated
                     genomic feature by RNAseq alignments, including 53 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:102556463"
                     /db_xref="RGD:7607957"
     CDS             302..2170
                     /gene="LOC102556463"
                     /codon_start=1
                     /product="zinc finger protein 431-like isoform X1"
                     /protein_id="XP_038940857.1"
                     /db_xref="GeneID:102556463"
                     /db_xref="RGD:7607957"
                     /translation="MLRQAPQLRHGEHIVMAHKGDVLTYDDVHVNFTREEWALLDPSQ
                     KSLYKDVMQETYRNLTAIGYNWGDHSIEEHFQSFRRHGRHERCHTGEKPSENTQCGKT
                     FAQHSHLQRHKSTHTGEKLCECKPRDKAFTYDSQLQNLERIHTGEKPYKCNQCGKAFE
                     RRCNLGRHKIIHTGRKSYKCNQCGKAFARLSHLKTHGITHTGEKPYKCDQCGKAFAYH
                     SYLQVHKRIHTGEKPYECDWCGKAFIHCSHLQVHKRIHTGEKPYECNRCGKAFVCQND
                     LKRHERIHTGEKPYKCNECDKAFAHHRNFRTHKMMHAGEKPYKCNQCGKAFSQNSHLQ
                     THKSTHTREELYKCKQCGKAFTCRNELQSHKRIHTGEKSYECNQCGKAFKSHRYLQVH
                     KTIHTGEKPYVCDQCGKAFAHHRTLRRHEIIHTGRKSYKCNQCGKAFARQSHLKTHGI
                     THTGEKPYECDQCGKAFAYHSYLQVHKRIHTGEKPYVCDQCGKAFAHRCHLQVHKRIH
                     TGEKPYECDQCGKAFVCQNDLKKHKRTHTGEKPYKCNECGKAFVCNASLRTHKVIHTG
                     VKPYECKHCGKAFVCQNDLKRHERIHTGVKPYECKQCGKAFSRSSHLQLHKRTHTY"
ORIGIN      
        1 gaggacaggc acaagtgcta ctgaaatgca aatctgtaga tctggaaatg gtctggccct
       61 gggcttgaag cttaggccga gaactgtgta tccttactgt atcttcagct cactctaacc
      121 cttatggagg ttctcaagtc actcaagacg actggccaat cagatccttc aatggacctg
      181 ccaatcagaa gagaaggcgg gcttttccgg gtgccttgtt gcaggattcg ctttgttgct
      241 aagccttctt aaatggtcct ggctgctgtg ctttgtgtcc tgcggttgga ttctgtgcgg
      301 catgctcagg caagctccac agttgcgaca tggtgagcac attgtcatgg cccacaaagg
      361 ggatgtactg acctatgatg atgtacatgt gaacttcacc cgagaagaat gggctttgct
      421 ggatccttca cagaagagtc tctacaaaga tgtgatgcag gagacctaca ggaacctcac
      481 tgctataggt tacaattggg gagaccatag tattgaagaa cattttcaaa gcttcagaag
      541 acatggaagg catgaaagat gtcatactgg agagaaaccc tctgaaaata ctcagtgtgg
      601 taaaaccttt gcacaacata gtcatctcca aagacataaa agcacacata ctggagagaa
      661 actctgtgaa tgtaagccac gtgataaagc ctttacatac gattctcagc ttcaaaatct
      721 tgaaagaatt catactggag aaaaacccta caaatgcaat caatgtggta aagcctttga
      781 acgtcgttgt aatcttggaa ggcataaaat aatacatact ggaagaaaat cctacaaatg
      841 caatcagtgt ggtaaagcct ttgcacgact cagtcatctc aaaacgcatg gaataacaca
      901 tactggagag aaaccttaca aatgcgatca gtgtggtaaa gcctttgcat atcatagtta
      961 tctccaagta cataaaagaa tacatactgg agagaagccc tatgaatgtg attggtgtgg
     1021 taaagccttt atacattgta gtcatctcca agtacataag agaatacata ctggagagaa
     1081 gccctatgaa tgtaatcgat gtggtaaagc ctttgtatgt cagaatgatc ttaaaaggca
     1141 tgaaagaatt catactggag agaaacccta caaatgtaat gaatgtgata aagcctttgc
     1201 acatcaccgt aattttcgaa cgcataaaat gatgcatgct ggagaaaaac cctacaaatg
     1261 caatcaatgt ggtaaagcct tttcacaaaa cagtcatctc caaacacata aaagcacaca
     1321 tactagagag gaactctata aatgtaagca atgtggtaaa gcctttacat gccgtaatga
     1381 acttcaaagt cataaaagga ttcatactgg agagaaatcc tatgaatgca atcagtgtgg
     1441 taaagccttt aaatctcatc gttatctcca agtacataaa acaatacata ctggagagaa
     1501 gccctatgtg tgtgatcaat gtggcaaagc ctttgcacat catcgtactc ttagaaggca
     1561 tgaaataata catactggaa gaaaatccta caaatgcaat cagtgtggta aagcctttgc
     1621 ccgacagagt catctcaaaa cgcatggaat aacacatact ggagagaaac cttatgaatg
     1681 tgatcaatgt ggtaaagcct ttgcatatca tagttatctc caagtacata aaagaataca
     1741 tactggagag aagccctatg tatgtgatca atgtggtaaa gcctttgcac atcgttgtca
     1801 tctccaagta cataaaagaa tacatactgg agagaagccc tatgaatgtg atcaatgtgg
     1861 taaagccttt gtatgtcaga atgatcttaa aaaacataaa agaacacata ctggagagaa
     1921 accttacaaa tgtaatgaat gtggtaaagc ctttgtatgt aacgctagtc tccgaacaca
     1981 taaagtaata catactggag tgaaacctta tgaatgtaag cactgtggta aagcctttgt
     2041 atgtcagaat gaccttaaaa ggcatgaaag aattcatact ggagtgaaac cttacgaatg
     2101 taagcaatgt ggtaaagcct tttcacgatc aagccacctc caactacata aaagaacaca
     2161 tacatactaa agagtaaccc tatgaatgta accaatgtag taaagccttt actgtgatct
     2221 tcaaaggtat ggtggtttaa atatacttgg cccatggcaa gtggcagtgt taggaggtat
     2281 ggcctttttg gagtagatgt ggcctttgag gaagtatgtc actgtggggg ggggatgggc
     2341 tttgagaccc catgcttaaa ctctacccag ggcagaagcg tcttctggct gccttctgat
     2401 caagatgtag aactctctcc tccagcacca tgtctgcttg gacactgaca ttccttccac
     2461 cttgataata gactgaacct ctgaatctgt atacctcccc tccccccaat taaatgtcct
     2521 ttctaagagt tgccttggtc atggtatctt ttcacagcat taaaacccaa attaacacaa
     2581 acagcataaa agatactaca ctagagagaa actgtgaatg tactcaatat ggtgaagcct
     2641 ttgcacattt ctatatctcc ttataacaaa agtgttcata cttccattca ctgaaaccct
     2701 gtgaatgcag aaaataacat tcttgagaaa agccttataa atgggctcag tgcggtaaag
     2761 tctttgtgaa atctgcataa atacctaaca attcaaaaac atggtcaaag taaatgccag
     2821 gagtctattg gaaacgagct gagttagaag ggtagggatt atgaatagtg tggttgggtg
     2881 tgcagttagt gctagaaagt taggggttag ggttaaagtg ttgggggggc agtgtgggtt
     2941 aaggttaggg actggacagg tagggttagg ttggcgttta gttttagggg gttaggaaag
     3001 agtgtgaatt tggggaagga aatgggagga ggttggctgt ggtacaggga gggatgaaaa
     3061 tgatatatag tattcataaa atcctcaaat acaaaaacaa gttgaaaagc ttcaacttaa
     3121 atagattgag gggtaaggac acttgttact acattaatga aattcagaaa aatcattagg
     3181 tcttatctta gaaatcattt attccaataa atagaaaact ctaaaataaa gcacatagat
     3241 ttctggatgt atataaccta ccaaaagtaa atcgtgaaga tctaaaaaat aaataaataa
     3301 ataaataaat aaattgagca gctttgtaga aagcagtaca agtgaagttg tggtcaaata
     3361 tttaccaaat aaaattacca gaccttcaat taaatactaa cacaaatcct tctcaaacta
     3421 tgctattaaa tagcaaagga aggttacatt accaaactct ttatgaagtt agtattagcc
     3481 taatactgaa accagataaa cacagaccaa tctccaacat aaaatatgca aaaattttta
     3541 aaaaattacc tgcagggttt ggggatttag ctcagtggta agagcgcttg cctaggaagc
     3601 gcaaggcccc gggttctgtc cccagctccg aaaaaaagaa tgaaaaaaaa aaaatcctgc
     3661 aaactattca aaaataaatc aaaaaattac catggtcaaa ctggtttaat ccagacatgt
     3721 agtgctggct caatatgtca ataaacttta taaatttctc taatctcttg ttttttgata
     3781 gaatagaaat cataacattt caatcatgtc aaatatccca tagaaactca gaatataaga
     3841 aacacatctc accataataa tatatatgtc aagcagtagc cttatcaacc agtaaaaata
     3901 tattgagaaa caaatctggg aaataatccc attcaaaaca acgtaaaaat ccaagctccc
     3961 cacccctaaa atctcttgaa ttaaatctga ccaaggatgt gaaagacctc tataatgaaa
     4021 tctttataga tactgaataa agttaaaaga ggacactaga agatggaaag accttgcatg
     4081 ttcatgggat ggccatactt ccaaaatcaa tctactgatt caatgcaatc ccaagagaaa
     4141 ttaaggggaa atattgtcaa aatacattac ataatgcatg gacaccctat aatcccatta
     4201 ttctgtataa taagtattaa gacatttttg aaagctttag atccaagctg gatttaggaa
     4261 tgcacagagt cacacaaacg cacatgacaa aactgcaaaa taccactgag gcatatatat
     4321 atgttctgcc agtaaaacca actctggtga gctggtgcct ggcattcatt gtcaagacag
     4381 cttagcctaa attatttatc tcaagtgaga aacccagctt caaaaacaag gtagatatta
     4441 cctgaggtca acaattgttc gagatgcatg aacatatatg aacacactgt atacaaatgg
     4501 aacataattc agacgaaaag ctgtggcaca tgccagaaca tagatgcccc aaggaattta
     4561 cacagaaaga aataacccag ttgccaagag acaaatacta tatgatgtta tttgtacaag
     4621 gagcctagag acaacaaatt ggaagcactg gaaagcagca tggtggttgc caagggcttt
     4681 gagagggaga agtgaagatc tggtatttat tgaatataga atttcagttt gaaatggtaa
     4741 aagaattgtg atgcatggga atcataatcc cacaatccag tgaatgtact tcatgccact
     4801 caactatcaa cttagataag aatgatagct ttcatattat gtatatttta caagaataat
     4861 aaaagtcctc catcgccata aagtgataag gaggtggcct tgtatagctg caacccagta
     4921 acagcaatgt taatctacgt tggtgagttt cttaatggtc tcagtgcatt tagatacctg
     4981 tatcttgaaa ataaagtaac gttaaaatgt ctaccaaggt cttttctgag gtatcttgaa
     5041 atctcaaagg aaactccttt taatgacttg gtgtaatgga ggcagctgtt ggctgtgagg
     5101 tgctgagaag aaggcagaat catagagaag cctgagtgct ctgcacagca ctaactccca
     5161 ggcagtactt agtttacttt cctttataaa actttacaaa atgaaattgt atgcctatct
     5221 tcttgattaa ccacatgtac tttcacaaga agtcagcatt atatgcttcc tttgtcctca
     5281 aatgtctttt tttttttagg tatgtcactg aggctagggt acatgttaca tgaacacccc
     5341 aagctacccc atacccccgg ctgcagtggt ggcgacctgc aacatgcaat gatttttttt
     5401 ttcttcacta aatatttgtg tcaattttgg ctgtcgagag atgtttaaat tcatgcctgt
     5461 ataagataat gcttctttag atatttagac taaagttttg tgtaacaaat atcagtttat
     5521 tactcctagg atggcgagcc tgctcgagac agaataagca gtaaacaaca caacacttat
     5581 cattcaatat tgagcgacaa agattccagc tctgagtcac aatggagtgc tagacagcat
     5641 cttagaacct tcaactgtaa aactgactca atagcacata ccattcggga ttactgtaaa
     5701 actaggggtg aaatgtgtaa gactgtgcag gccctgtcac ctaatggaca ccaaataaac
     5761 attagttact atgtctggtg ttagtgttat tagagagcct atgcaggata agggacaaca
     5821 gtaagtgtgc actggtaaac acgatccccc tcctccacac acacacatca ttaggaatga
     5881 tgagagattg agactaagac aactctagca gtcaacattt tgggttgttt caatgacacc
     5941 cttttcactt ggtcttgata actctgaaca ttgctaatat ccaacccacc tttttatctg
     6001 tttttaaaaa caatacataa aatggactat gaaggcaagc tgacaacagc tttttctttt
     6061 ttttaatatt tatttttagt atgtgtggga gtgtgaggca ccctcagaga cttgaagcat
     6121 ctggtcccct agagctggag ttagaagcag ctgtgaacct tccaatctgg atgctgggaa
     6181 ccaggccttg gtcctcttca atggtagtct gtgctcttaa ccactgagcc ttctccttag
     6241 ccccaaaact gcttctcttg aagaaaggaa cacatgtttt aaaattgtat cacattacct
     6301 ggtaaggact atcacaaaca atagatgctg tttaaaaaaa aaaatacagg ttgtgattta
     6361 gcaattaaga gctagaagac aggcacagtg caactagtgt ccctctaact gacctcagcc
     6421 tctgtcagat ttgcatcaga tgttgtaatg gagcctcggg tgagtggttc tccaacattg
     6481 gacacaatat ttcccaccaa gtttgcagag taaatacatg ttatcccaaa ctattgtata
     6541 gccttcaaac ttccaacttt ccctaaatga tttttactat ttgttctaaa aaacaaaaaa
     6601 gctcaacaac aacaagaaaa gccccagcat gctgtttcct tacattttct gtatttcatt
     6661 tcccctagaa agaccggggc ccaatgcttc tgaaccatgt tgggctgtac ttaaggacag
     6721 taatgcatta acacactttt ctcccatgta atttatttta atcattttat tccagaaaat
     6781 cttcagaggg cagaggggaa attccattca cccctatcat attctgccct gccctgctgc
     6841 acatcagctc agtggcttac caatggctaa gtattaatgc aggtttgttt ttgttttgtt
     6901 ttgttttctt taagatcagg ggtagagtgt ttctaaacag aaagaactgc actaagtcca
     6961 ttagtagaca ccaaatagct ttcagaatag gtctttctgg aaacaccttc aataatgtca
     7021 gtttagggtg ctaacagaag caggccactt cagaaatcat tttaaaccaa aacaaggaaa
     7081 tccacttaag aaagggttaa taagtaggta taaggaacat acgttggaac tgttgaaagt
     7141 cagtgcacac tgactttaaa catcaattaa gaaagtggta attgttcaaa ttttgaaggt
     7201 tatgatagga tcaatgaaga aatgtatttc ttagtcaatc ataagggaga agtttatgat
     7261 ttgactcatt tcccagtcaa tggaagcttg tggtttgaac gtgttttcta gttggtatgg
     7321 tcacagcctt caataggtga gaaccaaaag ccatgtactt tagaatgctt gtaagaggct
     7381 caacattgac agtagaaact ataaaaaatg tatagccaat agtcacatga aaagttaaca
     7441 caaaactgga aaccaaagta gaataattaa acataactga atgaatacag tattacatgt
     7501 gtttttgata cagtgtagaa atcaataaat atatttatta atatttttga gttaaatatt
     7561 gcaaaataaa ataactttaa aatatttatt gactcgtgtg ggagcatgta cctacttgca
     7621 cacatgtgag tgccacagtg cacatgtaga gacaagagga caacgttcag aagttagttc
     7681 tctccttcct ccatatctat tctgggtcta aaactcagat catcaaccca ctgagatatc
     7741 tcactggccc taaataaacc ctttaaatct ctatttacat cccttaaagt ttctatactc
     7801 aagttgacaa gaaaacaaaa caaaagatac tactatctta gttcactttc tggccaaagc
     7861 ctggtcaatt ttttt
//
