LOCUS       XM_039108950            5327 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus rho GTPase-activating protein 20-like
            (LOC102556298), mRNA.
ACCESSION   XM_039108950
VERSION     XM_039108950.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; corrected model; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051339.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio   :: 1% of CDS bases
            frameshifts :: corrected 3 indels
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-76                JACYVU010000139.1  102376-102451       c
            77-765              JACYVU010000139.1  99913-100601        c
            766-807             JACYVU010000139.1  86735-86776         c
            808-889             JACYVU010000139.1  86041-86122         c
            890-967             JACYVU010000139.1  81655-81732         c
            968-1031            JACYVU010000139.1  79980-80043         c
            1032-1266           JACYVU010000139.1  76339-76573         c
            1267-1279           JACYVU010000139.1  75308-75320         c
            1280-1389           JACYVU010000139.1  74911-75020         c
            1390-1561           JACYVU010000139.1  74353-74524         c
            1562-1563           "NN"               1-2
            1564-1579           JACYVU010000139.1  74337-74352         c
            1580-1835           JACYVU010000139.1  72642-72897         c
            1836-1975           JACYVU010000139.1  61994-62133         c
            1976-3913           JACYVU010000139.1  57906-59843         c
            3914-3914           "N"                1-1
            3915-4059           JACYVU010000139.1  57761-57905         c
            4060-4261           JACYVU010000139.1  52165-52366         c
            4262-4423           JACYVU010000139.1  48651-48812         c
            4424-4499           JACYVU010000139.1  48574-48649         c
            4500-4630           JACYVU010000139.1  43283-43413         c
            4631-4789           JACYVU010000139.1  41881-42039         c
            4790-4975           JACYVU010000139.1  38194-38379         c
            4976-5162           JACYVU010000139.1  32646-32832         c
            5163-5327           JACYVU010000139.1  31161-31325         c
FEATURES             Location/Qualifiers
     source          1..5327
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5327
                     /gene="LOC102556298"
                     /note="rho GTPase-activating protein 20-like; The sequence
                     of the model RefSeq transcript was modified relative to
                     its source genomic sequence to represent the inferred CDS:
                     inserted 3 bases in 2 codons; deleted 1 base in 1 codon;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 3 ESTs, 4 Proteins, and 97% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:102556298"
                     /db_xref="RGD:7734302"
     CDS             770..5221
                     /gene="LOC102556298"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 3 bases in 2 codons;
                     deleted 1 base in 1 codon"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: uncharacterized protein
                     LOC102556298"
                     /protein_id="XP_038964878.1"
                     /db_xref="GeneID:102556298"
                     /db_xref="RGD:7734302"
                     /translation="MEQTIWWYFFLQRSIREAKKHNIMELPMQIFTEDIACCDTPLYV
                     TATNFNMVNDIISKLLPMIRKHNIEDYQLWFCLGPGKAPRVLQGHEYPHDIRMINIQK
                     NLSSRDLRNFTAFPSLPGVIMKYLNADVHGKFILKPRNSARSQQQKGESAIFLQVAFL
                     SSHFNFIRTGDFLQNIKGSLMTSKLYDEWIGVPEKVNDEEKLAAVQSLLDKMPPENAA
                     LLRQLFCILYEIKNNSPFNEVSSYHLSVGLAPCLLFMPSSCNNGVTXDIGKKISLVEF
                     MIENSPKVFGEDLAALWLGTSLYHPPGGKSSCSQNNATNIGNIKETEHGLSSCPIGKT
                     CTPGYNTLPKSPAALPYAGLLDSQKHEGIVYTNPTVTSINPPQAKQKCLFGKSLSGLL
                     EDKTLPTPKLGFSITESFLPPTSSPSEHRRAEHGSGLTRTPSSKEISPTKFPGLYRMD
                     EPLPPHDILHEPPDIVSDDEKDHGKKKGKFKKKEKRTEGYAAFQEDSSGDEAESPSKM
                     KRSKGIHVFKKPSFSKKKEKDFKIKEKPKEEKHKEEKHKEEKHKEKKCKDLTAAYVVK
                     QWKEKKKKKKPTQESEVPQTDVPSLRPIFGAPLADAVERTMMYDGIRLPAVFRECVDY
                     MEQHGMKCEGMYRGSGVKSKVDELKAAYDREESPNLKEYEPNTVASLLKQYLRDLPEN
                     LLTRELMPRFEEACRRTTEMEKVQEFQRLLRELPEYNHLLLSWLIVHMDHIIAKEIET
                     KMSIQNISLVLSPTVQISNRVLCVLFTHVQELFSTVVLKQVTRPLRWSNMATMPTLPE
                     TQAGIKEEIRRQEFLLNCLHRDLQRGIKDLSKEERLWEVQRILTALKRKLREAKRQEC
                     ETKISQEIASLLKEDVSKEETKEIEEDINILLAQENEILTEQEELLAMEQFLRSQIAS
                     EKEEVHRLRAEIAEIQSRQHGRSETEEHSSDSECESKDEEELQIILEDLQRQNEELEI
                     KNNHLNQAVGEEREAIVELRVQLRLLQMQRAKSEQQLQEEEPERQGGTGPLPCEGVLE
                     VIAAKEQVKPSPSKDPKEXASELPRPCASYCKPESTACPAWQRSVKALRDAHSCTRLT
                     PRQAQVLGGFSVFSLLQQIPEPIFILLKHLICVLVIIKDSSMNNLDSYRLSLRIAPHV
                     LWGQTSRDSLFRSDVLRKMSLIQIMIDNYHRIFGNDDIFSKHIDKRSEDLKTYKESIN
                     YSGKSPIVTKAIAWHNWKTNDIDEKFNISYAALQEEGPTEKQKGYIYTKPPVYSDPAP
                     PRKKCLFGKNLTSIYVYRKLPAPILDMLSIIAEKGQKSDHIFKILPENSHWCLRERID
                     SEQLIEWNKECMLVIASILKTSTEDSSGKLYPSKASHLVLVIIRDSSTSNLDTNRLSI
                     RIAPYVLWDQTTKDAWFGSDVSRKMSIIQIMIDNYHQIFGNYNIFYKHIDRRSEDLKT
                     CADSINSSGKSPIMKEFLAGHNKKTCDNASRGPDAPRSLDCWICMFL"
ORIGIN      
        1 ttttattctt ttgtgttttc tcaccagtga ttcctgaaga cactatcctt aaccctttgt
       61 gcattttcaa ctctccgata tggagacttc gatgatttta atctagagga tgtgctgaaa
      121 gaaacttcct cagtaaagcg tgactcaaac aaacaagtcc accaagcaga cactgtggtc
      181 ggccgtgcac cacagtcaca atcttgcctt cagaaaagta cacgcatatg agactagctg
      241 tacctccaga tacctgtttg ttctgttgtg caaggcttgt gtcgtctcgt catacgtgtg
      301 tcatcttcct ttttcattca gtctatgtcg agtccatgag agaacatgca tctgccttcg
      361 cctttttctg ctgtacaaaa agagaactcc gacccatttc atacccctca ctgttttgtt
      421 ttgagacagg gtctcttgat ttagcccgag ttgtcctgaa attctctgtg ccgacaaggc
      481 cagctttgac ttgggtccag tgctagagca acagtgactc ttagccactg atgtgcattt
      541 ctagcttcag aacccatgac tttttatgat tcttcagtgt gatccccaca atggccttgg
      601 ggaccgatac cgagaccatt ctcacgatgt gacttctata aaccataaag cagccactgt
      661 gttttacaat ctgcttcctt tcatcctccc ttctcccttc aaagagccac tttagcacca
      721 cgactaggag gacaggaaca accagagccc catcaaatcc agcagttcca tggaacagac
      781 catttggtgg tatttctttc tacaaagatc cattcgtgaa gccaaaaaac acaacataat
      841 ggaacttccc atgcagatat tcactgagga cattgcatgc tgtgacactc ctctatatgt
      901 aacagcaaca aacttcaata tggtgaatga cataatcagc aagttactac caatgataag
      961 aaagcataac attgaagatt accaactgtg gttctgtctt ggccctggga aagctccaag
     1021 agtactccaa gggcatgagt atccacatga cattagaatg ataaatattc aaaagaactt
     1081 aagttcacgg gacttaagaa attttacagc tttcccttcc ctacctgggg taatcatgaa
     1141 atacctaaac gctgatgtac atgggaaatt catcttgaag cccagaaact cagcaagaag
     1201 ccagcagcaa aaaggtgagt ctgccatctt ccttcaggtg gcttttctta gttcccattt
     1261 taattttatt cgaactggag acttcctcca aaacatcaag ggaagtctaa tgacttcaaa
     1321 actatatgat gagtggattg gtgtacccga aaaggtcaat gatgaagaga aattagccgc
     1381 agtgcagagt cttttagata aaatgccacc tgaaaatgcg gctcttctga ggcaactttt
     1441 ttgtatatta tatgaaatta aaaataactc tccttttaat gaagtgtctt cttaccacct
     1501 atctgttggg ttagccccat gtctcttatt catgcccagc tcctgcaata atggagtgac
     1561 anntgatatt ggcaaaaaga tttctctagt agaatttatg atcgaaaatt ctccaaaagt
     1621 ttttggagag gacttggctg cactgtggct tggaacatca ctatatcatc ctcctggagg
     1681 aaagtcctca tgttcccaga ataatgcaac aaatattgga aacattaagg aaaccgaaca
     1741 tggactcagc agctgcccca ttgggaaaac atgcactcct ggctataata cactgccgaa
     1801 aagtccagct gctcttccct atgcgggcct tctagattca caaaaacatg aaggcattgt
     1861 atatactaac ccaaccgtaa catctattaa tccaccacaa gcaaaacaga aatgtttgtt
     1921 tggcaaatct ctttcgggtc ttttagaaga caaaactttg cctactccaa aacttggctt
     1981 cagcataacc gagtccttcc tgccccccac cagcagccct agtgaacacc gccgggctga
     2041 gcatggcagc gggctgaccc ggactcccag ctccaaggag atcagcccta caaaatttcc
     2101 tggattgtac cgaatggatg agcctttgcc tccccatgac atcctccacg agcctcctga
     2161 tatcgtgtca gatgatgaga aagaccatgg aaagaaaaag ggaaaattta agaaaaagga
     2221 gaaaaggact gaaggctacg ctgccttcca ggaagacagc tctggagatg aagctgaaag
     2281 tccttccaag atgaagaggt ctaagggaat ccatgtgttc aaaaagccca gcttctctaa
     2341 aaagaaggaa aaggatttta aaatcaaaga aaagcccaaa gaagaaaagc ataaagagga
     2401 aaagcacaaa gaggaaaagc ataaagaaaa gaaatgtaaa gacttgacgg ccgcctatgt
     2461 tgttaaacag tggaaggaga agaagaaaaa gaagaagcca actcaggagt cagaggtgcc
     2521 tcagacggac gtcccaagtc tcagacccat tttcggcgct cccttggctg acgcagtaga
     2581 gaggaccatg atgtacgacg gcatccggct gccagctgtc ttccgagagt gcgtggacta
     2641 catggagcag catggcatga agtgtgaagg catgtaccga gggtcaggag tcaaatcaaa
     2701 ggtagatgag ctgaaagcag cctatgatcg agaggagtct ccaaacttga aagaatatga
     2761 acctaacact gtagccagct tgctgaagca gtatttgcga gaccttcccg agaatttgct
     2821 taccagagag cttatgcccc gatttgaaga ggcttgtcgg aggaccacag agatggagaa
     2881 agtgcaggag ttccagcgct tgctcaggga actgcccgag tataaccacc ttctgctttc
     2941 ctggctcatt gtgcacatgg accacatcat tgcgaaggag atagaaacca agatgagcat
     3001 ccagaacatc tctctagtgc tgagcccaac tgtccagatc agcaatcggg tcctgtgtgt
     3061 gcttttcaca cacgtgcaag agctctttag caccgtggtc ctgaagcaag taacgagacc
     3121 tctgcgttgg tccaacatgg ccacaatgcc tacactgcca gagacccaag caggcatcaa
     3181 ggaagagatc aggagacagg agttcctttt gaactgttta catcgagatc tgcagcgcgg
     3241 gataaaggac ttatctaaag aagaaagatt atgggaagta cagaggattc tgactgccct
     3301 caagagaaag ctgagggaag ctaaaagaca agagtgtgag accaagattt cccaggagat
     3361 agccagccta ttgaaagagg atgtttccaa agaagaaacg aaggaaattg aggaggacat
     3421 aaatatcctc cttgcccagg agaatgagat cctgactgag caggaggagc tcctggccat
     3481 ggagcagttt ctgcgtagtc agatcgcctc ggagaaagaa gaggtccacc gcctccgagc
     3541 tgagattgcg gagatccaga gtcgccagca tggccgcagc gagacagagg agcactcttc
     3601 tgacagtgag tgcgagagca aggatgagga ggagctgcag atcattctgg aagacttaca
     3661 gaggcagaat gaagagttag aaataaagaa caatcacttg aaccaagcag ttggtgaaga
     3721 gcgggaggcc atcgttgagc tccgagtgca gctccggttg ctccagatgc agcgagccaa
     3781 gtctgagcag cagctccagg aggaggagcc cgagaggcaa gggggcacag gcccactgcc
     3841 ctgtgaaggt gtccttgagg tgatagcagc caaggagcag gtgaagccct cgcccagcaa
     3901 agacccgaag gagnatgcat ctgaactgcc ccggccctgt gcatcatact gtaagccaga
     3961 gtccactgcc tgtcctgcct ggcagcgttc tgtaaaggct ctcagagatg ctcactcttg
     4021 cacacgtctg actccgcgtc aggctcaggt cctgggaggt ttttctgtgt ttagcctttt
     4081 gcaacagatc ccagaaccaa tctttatact attaaaacat ctcatatgtg tattagtaat
     4141 aataaaagat tcttccatga ataatttaga cagttacagg ttatctctgc gcatagctcc
     4201 acatgtactg tggggtcaga cttcgagaga ttcattattt aggagtgacg tcttaagaaa
     4261 gatgtctctt atacaaatca tgattgacaa ctatcatcga atatttggaa atgatgatat
     4321 atttagtaaa cacattgaca aaaggtctga agacttaaag acatacaaag aatcaataaa
     4381 ttattctgga aaatctccta ttgtgacaaa agccatagct tggcacaact ggaaaaccaa
     4441 tgatattgat gaaaaattta atatttcata tgctgcactg caggaagaag gtcctacaga
     4501 gaaacagaaa ggctatatat ataccaagcc accagtatat tctgatccag caccaccaag
     4561 aaagaaatgc ttatttggca aaaatcttac aagcatttat gtctacagaa agctgcctgc
     4621 accaatactt gatatgttat ccataattgc agagaaagga caaaaatcag atcacatatt
     4681 caaaattcta cctgaaaatt cacactggtg cctcagagag aggattgaca gtgaacaact
     4741 cattgaatgg aataaagaat gcatgcttgt aatagcatct atcttgaaga cttctactga
     4801 agattcctca ggcaaacttt atccttctaa agcatctcat ttggtattag taataataag
     4861 agactcatcc acgagtaatt tagacactaa caggttatct atccggatag ctccttatgt
     4921 tttgtgggat cagactacaa aggatgcatg gtttgggagt gatgtatcaa gaaagatgtc
     4981 cattatacaa atcatgatcg acaactatca tcaaatattt ggaaattata atatatttta
     5041 taaacatatt gacagaagat ctgaggattt aaagacttgt gcagattcaa taaactcttc
     5101 tggcaaatca cctattatga aagaattcct agctggccac aacaagaaga catgcgataa
     5161 tgcatcaaga ggacctgatg cccccagaag cctggattgc tggatatgca tgtttctgtg
     5221 atgtacacat atactcacac atttataaaa ctactggtat atgttgtgcc cttggtttta
     5281 ttctctgtgt atttgaactt tataataaaa atacttttca ctgtgta
//
