LOCUS       XM_039087855            3001 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus schlafen family member 12-like
            (LOC102556120), partial mRNA.
ACCESSION   XM_039087855
VERSION     XM_039087855.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051345.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039087855.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: incomplete on the 5' end.
FEATURES             Location/Qualifiers
     source          1..3001
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            <1..3001
                     /gene="LOC102556120"
                     /note="schlafen family member 12-like; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 Protein, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 17 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:102556120"
                     /db_xref="RGD:7614463"
     CDS             <1..681
                     /gene="LOC102556120"
                     /codon_start=1
                     /product="schlafen family member 12-like"
                     /protein_id="XP_038943783.1"
                     /db_xref="GeneID:102556120"
                     /db_xref="RGD:7614463"
                     /translation="PHSPRSCCPDNPDALQQSAGLPVISGKVISSPEALCGKLFSPQE
                     AHEQLLWAQLDSPPNGTLVITKRWALDLPLQDKQGVILDVLQISQDSLLTLHGFVLGG
                     EDLEDDSTLLRELGAKLKGYYKQTALTLKQTLINLSGCTGKVGITTKITYLCHNKAVS
                     LYDSSSKIHYPRKHYLTTQTVRDLEKALLKYYAVCVPTQFTSETFHKYQWIVNFVKNV
                     INRALHEK"
ORIGIN      
        1 ccacacagtc cccgtagctg ctgtcctgac aatcctgatg ctcttcagca gagtgctggc
       61 cttccagtta tatctggaaa ggtgataagc tctccagaag ccctctgcgg gaaactgttc
      121 tcaccacagg aagcgcatga gcagttgctc tgggcacagt tggactcgcc tcctaatgga
      181 acgctggtca tcactaagag gtgggctttg gatctaccct tgcaagacaa gcagggagtc
      241 atcttggatg tgcttcagat ttcccaggac agtcttctga ccctgcatgg ctttgtcctg
      301 ggaggtgaag acctggagga tgacagcact cttctgaggg aactaggcgc taagttaaag
      361 ggctattata aacaaactgc cctaacacta aagcagacgc tgataaatct cagtggttgc
      421 actgggaaag taggcattac cacaaagata acatacttgt gtcataataa ggcagtgtct
      481 ctttatgatt caagctcgaa aatacattac cccagaaaac attatctgac aacccagaca
      541 gtaagggact tagagaaggc tttgctgaag tattatgcag tctgtgtccc cacacagttt
      601 acctctgaaa ctttccacaa gtaccagtgg atagttaatt ttgttaagaa tgtcataaat
      661 cgtgctttac atgaaaaatg actgcggtat ggtaatattt ttatatacgt gacagtcttt
      721 cctgattcta caaaaaatat tttaaaatgt gtctttgaat aactacacag ggaaaaaaaa
      781 ttctgggaaa gggattggtt gttcgagaag gcaatgataa agcatggttt tgaaaatgtg
      841 tccctgatct tggcacgtta atcccatgcc cttaatccca gttcttggag agaggcagac
      901 cattcccgtc taggtagaga gttcctagag agccacggct atgcaaagga ccctatctca
      961 aaacatgcaa acaaacaaac aagtaaaagc caagtgtccc tatccgtcca ccaccaccat
     1021 tgcagccagt ccttctttct gatggaatgc atggtgcctt taatgcacag aagaaactct
     1081 tccaagagaa gttcccaaag tgaatgacga agaaagcggt aggataaggc aacgttagcc
     1141 atagtgttgc tactcagccc tgtgtgtgat cactgctaaa cctgtggttt gtattttaca
     1201 acccaaagaa ggactttcca catgtccaaa atcacagagg caaggctctg attatatcaa
     1261 aactaaaggg agactgctca caatggcata tattaaatat gggacgtttc caaaaagacc
     1321 aaagacacta gacaataaat acatttggtt tctgcgatta gagtacattc tgtcttaaag
     1381 aaaaacacat tttctgtttt gatctatttc tttatcagta tgatttattt ttaaaatcta
     1441 catctttttt tatctactct gttcccaggt ctgtgtcttt atgaatacaa ttcttctgtc
     1501 tgtatctttc ttcgatgaag tttcattgtt tgatctggga agttctactt accaaacttt
     1561 ggacgccaaa caaatgttcc accattttaa tatgtttcta aaataaatga tctttacaaa
     1621 acatcatcaa attctcttaa agaactaaca ctagagacca acgttttggc ctttgatcct
     1681 ctatagaagt ttgccaaaat attcatttct ggttcccttt gaggcttttg gaattgtcta
     1741 tagaatttat ctcagccttg tctggtctca ggacatgtgt ttttgaagca gtgatgttta
     1801 attgtcctga ggaagagagc tctccctgcc tggcattggg gcctgcgaga ggcccccctg
     1861 ggagtttttt ggccgggtgt ggccccgttt atctgttatt gctctacatt ccctggtcaa
     1921 atgtcggtct ttgccacatc gttgacatat tccaggaggc ataggcgccc ttttagtatc
     1981 actttgtttt ttcctgcagt tacgtctgag atgatcctgc tcaccacagt taaaaacact
     2041 tgaaatcttg ggtcatctct agctgtctag gggcagtttc tactacagtt atatcaggcg
     2101 agaagatccg atatcagctg tctgtctaat ccactcatct actgatgctg accttgccct
     2161 cagtggtctg attccctccc tgcattcagt attcacattt tcaaaggcta aagactcaac
     2221 tgttgccttt cttgctgctg tgtctgatac actcctttcc acagctgagg tcagcctttg
     2281 taaaaagtca gggaaggttt ctttaggacc ttgtatgacc tgagtaaatg gttcaagttt
     2341 tttctctgat tctgcgactt tgtcccaggc ctttaaggct gacaatcgac acaatgccag
     2401 agtttcttca tcatatacag cccacacctc tacctcagca aagcgacatt caccaagcag
     2461 ttatctgtgg aaatctctct acccctggct ctattctgtc gtgctatctc cctcacctct
     2521 tctctccacc atgagatcca ttgtgaattc gcagcaggct ctagtattgc tcttgccata
     2581 tctttccagt cgtgggggat tattctattt ttaattcgtt ttacaaatgg cgaatgcatt
     2641 ccaaaattag tgacactctc cttaaatttc ctcagttcta acacacccat gggttgccat
     2701 tcaaattctt cataaccctg tggatgatca tcgtctggag gtctttgtta tacactaatc
     2761 ggatgcacta aagtttgttt tctaataacc tttggttggc tttctctaat tttatcttct
     2821 ttctctacct tagtattttc cttcattgtg attttaaatc cctcccttaa ggtctgtgtc
     2881 caagcttcag ctctctcctt tttttttttt tttttaattt tttttattaa cttgagtatt
     2941 tcttatttac atttcgaatg taattccctt tcccggtttc caggcaaaca tccccctaat
     3001 c
//
