LOCUS       XM_039091428            3342 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus pyrin domain-containing protein 3-like
            (LOC102556096), transcript variant X1, mRNA.
ACCESSION   XM_039091428
VERSION     XM_039091428.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051348.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039091428.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3342
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="13"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3342
                     /gene="LOC102556096"
                     /note="pyrin domain-containing protein 3-like; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 4 ESTs, 10 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     66 samples with support for all annotated introns"
                     /db_xref="GeneID:102556096"
                     /db_xref="RGD:7636450"
     CDS             537..3113
                     /gene="LOC102556096"
                     /codon_start=1
                     /product="mucin-5AC-like isoform X1"
                     /protein_id="XP_038947356.1"
                     /db_xref="GeneID:102556096"
                     /db_xref="RGD:7636450"
                     /translation="MVNHYKKIVLMFGLERINDYNFRTLKSLLTHDLKLTQKMQDDYD
                     RIKIADLMEEKFPEDAGLSKLIEVWEGIPEFEDHADTLRKEMEKVRNKVERKSESSTP
                     LLTSNKMEIPEVEPARTTSSSEESKDVIPDIIKAQFWMEESNLSELSATNTCPAESEP
                     LTSSCLQTPLELSEISSTILATSQGSSAPCSTYVKVSQVSPVTMSRSIQNIQTCQKTS
                     TLSYNHQATLMSPKTEPSSVPATMTSGHNSPRVPAATVSSSFNKRQVTRATVPTSVQT
                     SQMTPATMTSGHNSPRVPAATVSSSFNKRQVTRATVPTSVQTLGMTPATMTSGHNSPR
                     VPAATVSSGFNKRQVTRATVPTSVQTSQMTPATMTSGCNCPQEPAATVSSGFNKSQMT
                     PATVSSSVEATWMPQAIVTTSIQTFQMAPATMTSGHNSPRVPAATVSSSFNKRQVTRA
                     TVPSVQTLGMTPATMTSGHNSPRVPAATVSSGFNRPQVTPATVPSRVQTLVAPATMTS
                     GHNSPRVPAATVSSSFNKRQVTRATVPTSIQTLGMTPATMTSGHNSPRVPAATVSSSF
                     NKNQVTPATVPSRVQTLGMTPAAMTSGCNNLQVTPATVPSSHNTPQVSSATVHSATLV
                     SPATPLKKPRLRNVSTQPSEEDGQQQGPKQVMVLKATKPFTFDTRENKQMFHATVATE
                     TEFFRVKVFDIALKKIFIPNKVIVISDYFGYNGFLEIHKTACVAEVNGNNVMNIPSSL
                     RRRANSTPKIDTLCTQREGTFVNGIFKVYEKTVKSEFTYYGIEDRTGRMEVVVYGQLA
                     NIYCEPGDKLRLFCFELSSSFDNWQLRSVRHSYMQVIKNRRRTSRSPDPYAIIETAQS
                     LY"
ORIGIN      
        1 tcaaaggaat aaagattcct aggaaccctg ttgtaagctt gtaggacatg agggttttaa
       61 ttttgaatct tgtcccttta aagacttgca agaaaaatcc tgagtgtaac tagctctctg
      121 acttttttcg taactttaca ggaagaaaac tcttaagttt cagtatctga ggaaatcgaa
      181 agctatgaac attgttgaga gagatctcac gttttatcgc tctgctcccc acaaaatagc
      241 acaggatgag acacccagta cttttcagtc tgagcagtct gtgcagtgaa tctaaccagt
      301 gttggcattc cttctctttc tgtaaacact tcatttccta agaatttggg gagattacaa
      361 aatccttgcg tatacacaca cacacacaca cacacacaca cacacacaca cacacactca
      421 ctcactcact cactgcttcc tacgctgcaa aagccggata ccactgaaga aatttctgaa
      481 gaggagataa acgattgtcc tttggttggt tttctggctt atccataact tgagagatgg
      541 tgaatcacta caagaaaatt gttctaatgt tcggattaga acgtatcaat gactataact
      601 ttagaacgct taagtcctta ctgacccatg acctaaaact gactcagaaa atgcaagatg
      661 attatgacag aattaagatt gctgacttaa tggaagaaaa gttcccagag gacgctggat
      721 tgagcaaact gatagaagtg tgggaaggta ttccagaatt tgaagatcat gctgatacac
      781 ttagaaaaga gatggagaaa gttagaaaca aagtcgaaag aaagtctgaa tccagtactc
      841 ccctacttac ctccaacaag atggaaattc cagaagtaga gccagctagg acgacgtctt
      901 catcagagga aagcaaagat gttatccctg acattataaa agcccagttt tggatggaag
      961 agtctaacct ttcagaactt tcggcaacca acacatgccc agctgagagt gaacccctga
     1021 cttccagctg cctccagacg ccattggagc tttcagaaat atcatccacc atattggcaa
     1081 catctcaagg ttcttcagca ccatgttcca cctatgtcaa ggtttcccag gtgtctccag
     1141 taacgatgtc caggagcatc cagaatatcc agacctgtca aaaaacctca acactttctt
     1201 ataatcacca agctaccctg atgtctccaa aaacagagcc cagcagtgtc ccggcaacaa
     1261 tgaccagtgg tcacaatagt cctcgggtgc ctgcagcaac agtatccagc agtttcaata
     1321 aacgtcaggt gacccgagcc acagtgccca ccagtgtcca gacctctcaa atgaccccag
     1381 caacaatgac cagtggtcac aatagtcctc gggtgcctgc agcaacagta tccagcagtt
     1441 tcaataaacg tcaggtgacc cgagccacag tgcccaccag tgtccagacc ttaggaatga
     1501 ccccagcaac aatgaccagt ggtcacaata gtcctcgggt gcctgcagca acagtatcca
     1561 gtggtttcaa taaacgtcag gtgacccgag ccacagtgcc caccagtgtc cagacctctc
     1621 aaatgacccc agcaacaatg accagtggtt gtaattgtcc tcaggagcct gcagcaacag
     1681 tatccagtgg tttcaataaa tctcagatga ctccagccac agtgtccagc agtgtggagg
     1741 ccacatggat gcctcaagca atagtgacca ccagtatcca gacctttcaa atggccccag
     1801 caacaatgac cagtggtcac aatagtcctc gggtgcctgc agcaacagta tccagcagtt
     1861 tcaataaacg tcaggtgacc cgagccacag tgcccagtgt ccagacctta ggaatgaccc
     1921 cagcaacaat gaccagtggt cacaatagtc ctcgggtgcc tgcagcaaca gtatccagcg
     1981 gtttcaatag acctcaggtg accccagcaa cagtgcccag ccgggtccag accttagtgg
     2041 ccccagcaac aatgaccagt ggtcacaata gtcctcgggt gcctgcagca acagtatcca
     2101 gcagtttcaa taaacgtcag gtgacccgag ccacagtgcc caccagtatc cagaccttag
     2161 gaatgacccc agcaacaatg accagtggtc acaatagtcc tcgggtgcct gcagcaacag
     2221 tatccagcag tttcaataaa aatcaggtga ccccagcaac agtgcccagc cgggtccaga
     2281 ccttaggaat gaccccagca gcaatgacca gtggttgtaa taatctgcag gtgacccctg
     2341 caacagtgcc cagcagtcac aatacccctc aggtgtcttc cgcaacagtg cacagtgcta
     2401 ccttggtgtc tccagcaaca ccactcaaga aaccaagact gaggaatgta tctacacaac
     2461 cttctgaaga agatggtcaa cagcaaggtc ccaaacaagt gatggtgtta aaagcaacaa
     2521 agccattcac atttgacacg agagaaaaca aacagatgtt ccatgccact gtggctacag
     2581 agactgaatt cttcagagtg aaggtgtttg acatagccct caagaaaatt ttcatcccta
     2641 ataaagtcat tgtcatctca gattattttg gctacaatgg gtttctagag atacacaaaa
     2701 ctgcatgtgt agcagaagtg aatggcaaca atgtgatgaa tatcccatct tccctgagac
     2761 gaagagccaa ctcaacacct aaaattgata ctctttgtac acaaagagaa ggaacatttg
     2821 tgaatggaat atttaaagta tatgagaaaa cagtgaagag tgaattcact tactacggaa
     2881 tagaagatcg aacagggaga atggaagtgg tggtatacgg acaattggcc aatatatact
     2941 gtgagcctgg ggataaactt agactcttct gctttgagct gagctcaagt tttgataatt
     3001 ggcagctgag atctgtgagg cacagttata tgcaggtcat caagaatagg aggagaacca
     3061 gtagatctcc cgatccctat gcaattatcg aaacagctca aagcctctat tgatggtttc
     3121 ctcaacaaga atggaaagat tgctgataag cttcaagtgc agaagaaaaa tgtatatatg
     3181 gcatatagtg aaataaaatg catatcaact ccagctctta atcctaggga ctactatcct
     3241 tttaattcgt tccttatgca atttagatta tctatattac atatttccat ctgtatgtct
     3301 caaaatatga aaaaaagact aataaatatt ttatgtaaat gg
//
